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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 16739 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b8d:A (1.9) BS01 PEB ? GO:0009507 ... O36005 10388620
    2 1b8d:A (1.9) BS02 PEB ? GO:0009507 ... O36005 10388620
    3 1b8d:A (1.9) BS03 PEB ? GO:0009507 ... O36005 10388620
    4 1b8d:A (1.9) BS04 PEB ? GO:0009507 ... O36005 10388620
    5 1b8d:B (1.9) BS01 PEB ? GO:0009507 ... O36004 10388620
    6 1b8d:B (1.9) BS02 PEB ? GO:0009507 ... O36004 10388620
    7 1b8d:K (1.9) BS01 PEB ? GO:0009507 ... O36005 10388620
    8 1b8d:K (1.9) BS02 PEB ? GO:0009507 ... O36005 10388620
    9 1b8d:K (1.9) BS03 PEB ? GO:0009507 ... O36005 10388620
    10 1b8d:L (1.9) BS01 PEB ? GO:0009507 ... O36004 10388620
    11 1b8d:L (1.9) BS02 PEB ? GO:0009507 ... O36004 10388620
    12 1f99:A (2.4) BS02 PEB ? GO:0009507 ... P59858 11463658
    13 1f99:B (2.4) BS01 PEB ? GO:0009507 ... P59859 11463658
    14 1f99:K (2.4) BS01 PEB ? GO:0009507 ... P59858 11463658
    15 1f99:L (2.4) BS02 PEB ? GO:0009507 ... P59859 11463658
    16 1f99:M (2.4) BS01 PEB ? GO:0009507 ... P59858 11463658
    17 1f99:N (2.4) BS01 PEB ? GO:0009507 ... P59859 11463658
    18 1phn:B (1.65) BS01 PEB ? GO:0009507 ... P00311 10354419
    19 1qgw:A (1.63) BS03 PEB ? GO:0030089 ... Q00433 10430868
    20 1qgw:A (1.63) BS04 PEB ? GO:0030089 ... Q00433 10430868
    21 1qgw:A (1.63) BS05 PEB ? GO:0030089 ... Q00433 10430868
    22 1qgw:B (1.63) BS03 PEB ? GO:0030089 ... P30943 10430868
    23 1qgw:B (1.63) BS04 PEB ? GO:0030089 ... P30943 10430868
    24 1qgw:C (1.63) BS01 PEB ? GO:0009507 ... P27198 10430868
    25 1qgw:C (1.63) BS02 PEB ? GO:0009507 ... P27198 10430868
    26 1qgw:C (1.63) BS03 PEB ? GO:0009507 ... P27198 10430868
    27 1qgw:D (1.63) BS02 PEB ? GO:0009507 ... P27198 10430868
    28 1qgw:D (1.63) BS03 PEB ? GO:0009507 ... P27198 10430868
    29 1qgw:D (1.63) BS04 PEB ? GO:0009507 ... P27198 10430868
    30 1xf6:A (1.1) BS02 PEB ? GO:0030089 ... Q00433 15504407
    31 1xf6:A (1.1) BS03 PEB ? GO:0030089 ... Q00433 15504407
    32 1xf6:A (1.1) BS04 PEB ? GO:0030089 ... Q00433 15504407
    33 1xf6:B (1.1) BS03 PEB ? GO:0030089 ... P30943 15504407
    34 1xf6:B (1.1) BS04 PEB ? GO:0030089 ... P30943 15504407
    35 1xf6:C (1.1) BS01 PEB ? GO:0009507 ... P27198 15504407
    36 1xf6:C (1.1) BS02 PEB ? GO:0009507 ... P27198 15504407
    37 1xf6:C (1.1) BS03 PEB ? GO:0009507 ... P27198 15504407
    38 1xf6:D (1.1) BS02 PEB ? GO:0009507 ... P27198 15504407
    39 1xf6:D (1.1) BS03 PEB ? GO:0009507 ... P27198 15504407
    40 1xf6:D (1.1) BS04 PEB ? GO:0009507 ... P27198 15504407
    41 1xg0:A (0.97) BS03 PEB ? GO:0030089 ... Q00433 15504407
    42 1xg0:A (0.97) BS04 PEB ? GO:0030089 ... Q00433 15504407
    43 1xg0:A (0.97) BS05 PEB ? GO:0030089 ... Q00433 15504407
    44 1xg0:B (0.97) BS03 PEB ? GO:0030089 ... P30943 15504407
    45 1xg0:B (0.97) BS04 PEB ? GO:0030089 ... P30943 15504407
    46 1xg0:C (0.97) BS01 PEB ? GO:0009507 ... P27198 15504407
    47 1xg0:C (0.97) BS02 PEB ? GO:0009507 ... P27198 15504407
    48 1xg0:C (0.97) BS03 PEB ? GO:0009507 ... P27198 15504407
    49 1xg0:C (0.97) BS04 PEB ? GO:0009507 ... P27198 15504407
    50 1xg0:D (0.97) BS02 PEB ? GO:0009507 ... P27198 15504407
    51 1xg0:D (0.97) BS03 PEB ? GO:0009507 ... P27198 15504407
    52 1xg0:D (0.97) BS04 PEB ? GO:0009507 ... P27198 15504407
    53 2bv8:A (2.01) BS01 PEB ? GO:0009507 ... Q6B8L6 17118524
    54 2bv8:B (2.01) BS01 PEB ? GO:0009507 ... Q6B8L7 17118524
    55 2bv8:K (2.01) BS01 PEB ? GO:0009507 ... Q6B8L6 17118524
    56 2vjh:A (2.2) BS01 PEB ? GO:0009579 ... Q7NLD7 N/A
    57 2vjh:A (2.2) BS02 PEB ? GO:0009579 ... Q7NLD7 N/A
    58 2vjh:A (2.2) BS03 PEB ? GO:0009579 ... Q7NLD7 N/A
    59 2vjh:A (2.2) BS04 PEB ? GO:0009579 ... Q7NLD7 N/A
    60 2vjh:B (2.2) BS02 PEB ? GO:0009579 ... Q7NLD6 N/A
    61 2vjh:B (2.2) BS03 PEB ? GO:0009579 ... Q7NLD6 N/A
    62 2vjh:C (2.2) BS01 PEB ? GO:0009579 ... Q7NLD7 N/A
    63 2vjh:C (2.2) BS02 PEB ? GO:0009579 ... Q7NLD7 N/A
    64 2vjh:C (2.2) BS03 PEB ? GO:0009579 ... Q7NLD7 N/A
    65 2vjh:D (2.2) BS02 PEB ? GO:0009579 ... Q7NLD6 N/A
    66 2vjh:D (2.2) BS03 PEB ? GO:0009579 ... Q7NLD6 N/A
    67 3v57:A (1.7) BS01 PEB ? GO:0009507 ... P11392 22863205
    68 3v57:A (1.7) BS02 PEB ? GO:0009507 ... P11392 22863205
    69 3v57:A (1.7) BS03 PEB ? GO:0009507 ... P11392 22863205
    70 3v57:A (1.7) BS04 PEB ? GO:0009507 ... P11392 22863205
    71 3v57:B (1.7) BS01 PEB ? GO:0009507 ... P11393 22863205
    72 3v57:B (1.7) BS02 PEB ? GO:0009507 ... P11393 22863205
    73 3v57:B (1.7) BS03 PEB ? GO:0009507 ... P11393 22863205
    74 3v57:C (1.7) BS01 PEB ? GO:0009507 ... P11392 22863205
    75 3v57:C (1.7) BS02 PEB ? GO:0009507 ... P11392 22863205
    76 3v57:C (1.7) BS03 PEB ? GO:0009507 ... P11392 22863205
    77 3v57:D (1.7) BS01 PEB ? GO:0009507 ... P11393 22863205
    78 3v57:D (1.7) BS02 PEB ? GO:0009507 ... P11393 22863205
    79 3v57:D (1.7) BS03 PEB ? GO:0009507 ... P11393 22863205
    80 3v58:A (1.85) BS01 PEB ? GO:0009507 ... P11392 22863205
    81 3v58:A (1.85) BS02 PEB ? GO:0009507 ... P11392 22863205
    82 3v58:A (1.85) BS03 PEB ? GO:0009507 ... P11392 22863205
    83 3v58:A (1.85) BS04 PEB ? GO:0009507 ... P11392 22863205
    84 3v58:B (1.85) BS01 PEB ? GO:0009507 ... P11393 22863205
    85 3v58:B (1.85) BS02 PEB ? GO:0009507 ... P11393 22863205
    86 3v58:B (1.85) BS03 PEB ? GO:0009507 ... P11393 22863205
    87 3v58:C (1.85) BS01 PEB ? GO:0009507 ... P11392 22863205
    88 3v58:C (1.85) BS02 PEB ? GO:0009507 ... P11392 22863205
    89 3v58:C (1.85) BS03 PEB ? GO:0009507 ... P11392 22863205
    90 3v58:C (1.85) BS04 PEB ? GO:0009507 ... P11392 22863205
    91 3v58:D (1.85) BS01 PEB ? GO:0009507 ... P11393 22863205
    92 3v58:D (1.85) BS02 PEB ? GO:0009507 ... P11393 22863205
    93 3v58:D (1.85) BS03 PEB ? GO:0009507 ... P11393 22863205
    94 4lmx:A (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    95 4lmx:A (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    96 4lmx:A (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    97 4lmx:A (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    98 4lmx:B (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    99 4lmx:B (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    100 4lmx:C (1.8) BS01 PEB ? GO:0030089 ... U5TBU5 24979784
    101 4lmx:C (1.8) BS02 PEB ? GO:0030089 ... U5TBU5 24979784
    102 4lmx:C (1.8) BS04 PEB ? GO:0030089 ... U5TBU5 24979784
    103 4lmx:C (1.8) BS05 PEB ? GO:0030089 ... U5TBU5 24979784
    104 4lmx:D (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    105 4lmx:D (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    106 4lmx:E (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    107 4lmx:E (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    108 4lmx:E (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    109 4lmx:E (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    110 4lmx:F (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    111 4lmx:F (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    112 4lmx:G (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    113 4lmx:G (1.8) BS02 PEB ? GO:0030089 ... U5TBJ3 24979784
    114 4lmx:G (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    115 4lmx:G (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    116 4lmx:H (1.8) BS01 PEB ? GO:0009507 ... U5T8W0 24979784
    117 4lmx:H (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    118 4lmx:H (1.8) BS04 PEB ? GO:0009507 ... U5T8W0 24979784
    119 4lmx:I (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    120 4lmx:I (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    121 4lmx:I (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    122 4lmx:I (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    123 4lmx:J (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    124 4lmx:J (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    125 4lmx:K (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    126 4lmx:K (1.8) BS02 PEB ? GO:0030089 ... U5TBJ3 24979784
    127 4lmx:K (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    128 4lmx:K (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    129 4lmx:L (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    130 4lmx:L (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    131 5aqd:A (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    132 5aqd:A (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    133 5aqd:A (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    134 5aqd:A (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    135 5aqd:B (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    136 5aqd:B (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    137 5aqd:B (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    138 5aqd:B (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    139 5aqd:C (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    140 5aqd:C (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    141 5aqd:C (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    142 5aqd:C (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    143 5aqd:D (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    144 5aqd:D (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    145 5aqd:D (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    146 5aqd:D (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    147 5aqd:E (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    148 5aqd:E (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    149 5aqd:E (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    150 5aqd:E (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    151 5aqd:F (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    152 5aqd:F (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    153 5aqd:F (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    154 5aqd:F (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    155 5aqd:G (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    156 5aqd:G (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    157 5aqd:G (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    158 5aqd:G (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    159 5aqd:H (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    160 5aqd:H (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    161 5aqd:H (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    162 5aqd:H (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    163 5aqd:I (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    164 5aqd:I (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    165 5aqd:I (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    166 5aqd:I (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    167 5aqd:J (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    168 5aqd:J (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    169 5aqd:J (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    170 5aqd:J (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    171 5aqd:K (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    172 5aqd:K (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    173 5aqd:K (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    174 5aqd:K (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    175 5aqd:L (2.121) BS01 PEB ? GO:0009579 ... A0A0E3W010 27068646
    176 5aqd:L (2.121) BS02 PEB ? GO:0009579 ... A0A0E3W010 27068646
    177 5aqd:L (2.121) BS03 PEB ? GO:0009579 ... A0A0E3W010 27068646
    178 5aqd:L (2.121) BS04 PEB ? GO:0009579 ... A0A0E3W010 27068646
    179 5aqd:M (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    180 5aqd:M (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    181 5aqd:M (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    182 5aqd:M (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    183 5aqd:N (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    184 5aqd:N (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    185 5aqd:N (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    186 5aqd:N (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    187 5aqd:O (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    188 5aqd:O (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    189 5aqd:O (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    190 5aqd:O (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    191 5aqd:P (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    192 5aqd:P (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    193 5aqd:P (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    194 5aqd:P (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    195 5aqd:Q (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    196 5aqd:Q (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    197 5aqd:Q (2.121) BS03 PEB ? GO:0009579 ... A0A0E4G455 27068646
    198 5aqd:Q (2.121) BS04 PEB ? GO:0009579 ... A0A0E4G455 27068646
    199 5aqd:R (2.121) BS01 PEB ? GO:0009579 ... A0A0E4G455 27068646
    200 5aqd:R (2.121) BS02 PEB ? GO:0009579 ... A0A0E4G455 27068646
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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