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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3hd2:A (1.1) BS04 PE0 2.7.6.3 GO:0000287 ... P26281 N/A
    2 3lze:A (1.9) BS02 PE0 4.2.3.12 GO:0003874 ... A5K2B2 N/A
    3 3m0n:A (1.9) BS02 PE0 4.2.3.12 GO:0003874 ... A5K2B2 N/A
    4 5z79:A (2.9) BS04 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    5 5z79:C (2.9) BS04 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    6 5z79:D (2.9) BS03 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    7 5z79:E (2.9) BS03 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    8 6kck:A (2.5) BS01 PE0 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    9 6kck:B (2.5) BS01 PE0 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    10 6kcl:A (2.7) BS01 PE0 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    11 6kcl:B (2.7) BS01 PE0 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    12 6kcm:A (2.3) BS01 PE0 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    13 6kcm:B (2.3) BS01 PE0 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    14 6ojo:A (1.886) BS01 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    15 6ojo:A (1.886) BS02 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    16 6ojo:B (1.886) BS01 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    17 6ojo:B (1.886) BS02 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    18 6ojo:C (1.886) BS01 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    19 6ojo:C (1.886) BS02 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    20 6ojo:D (1.886) BS01 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    21 6ojo:D (1.886) BS02 PE0 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    22 8evk:A (1.49) BS01 PE0 ? GO:0004150 ... B5Z9C8 36820301
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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