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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1arz:B (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    2 1arz:C (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    3 1arz:D (2.6) BS02 PDC 1.17.1.8 GO:0005737 ... P04036 9398235
    4 1c3v:A (2.39) BS02 PDC 1.17.1.8 GO:0005737 ... P9WP23 12962488
    5 1c3v:B (2.39) BS02 PDC 1.17.1.8 GO:0005737 ... P9WP23 12962488
    6 1p9l:A (2.3) BS02 PDC 1.17.1.8 GO:0005737 ... P9WP23 12962488
    7 1p9l:B (2.3) BS02 PDC 1.17.1.8 GO:0005737 ... P9WP23 12962488
    8 2pc2:A (1.538) BS01 PDC 3.2.1.17 GO:0003796 ... P00698 18350532
    9 2pc2:A (1.538) BS02 PDC 3.2.1.17 GO:0003796 ... P00698 18350532
    10 2pc2:A (1.538) BS03 PDC 3.2.1.17 GO:0003796 ... P00698 18350532
    11 2pc2:A (1.538) BS04 PDC 3.2.1.17 GO:0003796 ... P00698 18350532
    12 2pc2:A (1.538) BS05 PDC 3.2.1.17 GO:0003796 ... P00698 18350532
    13 2pc2:A (1.538) BS06 PDC 3.2.1.17 GO:0003796 ... P00698 18350532
    14 2pe7:A (1.46) BS01 PDC ? GO:0005576 ... P02883 20606256
    15 2pe7:A (1.46) BS02 PDC ? GO:0005576 ... P02883 20606256
    16 2pes:A (1.6) BS02 PDC 1.7.3.3 GO:0004846 ... Q00511 20606256
    17 2pes:A (1.6) BS03 PDC 1.7.3.3 GO:0004846 ... Q00511 20606256
    18 2pes:A (1.6) BS04 PDC 1.7.3.3 GO:0004846 ... Q00511 20606256
    19 3lgr:A (1.64) BS01 PDC 3.2.1.8 GO:0004553 ... P36217 20606256
    20 3lgr:A (1.64) BS02 PDC 3.2.1.8 GO:0004553 ... P36217 20606256
    21 3ojo:A (2.5) BS02 PDC ? GO:0000166 ... P95708 21454499
    22 3ojo:A (2.5) BS03 PDC ? GO:0000166 ... P95708 21454499
    23 3ojo:A (2.5) BS04 PDC ? GO:0000166 ... P95708 21454499
    24 3ojo:A (2.5) BS05 PDC ? GO:0000166 ... P95708 21454499
    25 3ojo:B (2.5) BS01 PDC ? GO:0000166 ... P95708 21454499
    26 3ojo:B (2.5) BS03 PDC ? GO:0000166 ... P95708 21454499
    27 3ojo:B (2.5) BS04 PDC ? GO:0000166 ... P95708 21454499
    28 4ih3:A (2.493) BS02 PDC 4.1.1.45 GO:0001760 ... Q8TDX5 25392945 PDBbind: -logKd/Ki=4.82, Ki=15.2uM
    29 4ih3:B (2.493) BS02 PDC 4.1.1.45 GO:0001760 ... Q8TDX5 25392945
    30 4ih3:C (2.493) BS02 PDC 4.1.1.45 GO:0001760 ... Q8TDX5 25392945
    31 4ih3:D (2.493) BS02 PDC 4.1.1.45 GO:0001760 ... Q8TDX5 25392945
    32 4ih3:E (2.493) BS02 PDC 4.1.1.45 GO:0001760 ... Q8TDX5 25392945
    33 4ih3:F (2.493) BS02 PDC 4.1.1.45 GO:0001760 ... Q8TDX5 25392945 PDBbind: -logKd/Ki=4.82, Ki=15.2uM
    34 4irw:A (1.396) BS01 PDC ? GO:0009374 ... P22629 N/A
    35 4irw:A (1.396) BS02 PDC ? GO:0009374 ... P22629 N/A
    36 4irw:A (1.396) BS03 PDC ? GO:0009374 ... P22629 N/A
    37 4irw:A (1.396) BS04 PDC ? GO:0009374 ... P22629 N/A
    38 4irw:A (1.396) BS05 PDC ? GO:0009374 ... P22629 N/A
    39 4irw:A (1.396) BS06 PDC ? GO:0009374 ... P22629 N/A
    40 4irw:A (1.396) BS07 PDC ? GO:0009374 ... P22629 N/A
    41 5cq6:A (1.97) BS01 PDC ? N/A Q9UIF8 N/A
    42 5tem:A (2.2) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    43 5tem:C (2.2) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    44 5tjy:A (2.4) BS01 PDC 1.17.1.8 GO:0005737 ... A5U6C6 32980502
    45 5tjz:A (1.5) BS01 PDC 1.17.1.8 GO:0005737 ... P9WP23 32980502
    46 5us6:A (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    47 5us6:B (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    48 5us6:C (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    49 5us6:E (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    50 5us6:F (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    51 5us6:G (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    52 5us6:I (2.61) BS01 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    53 5us6:J (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    54 5us6:K (2.61) BS02 PDC 1.17.1.8 GO:0005737 ... Q8DEM0 32980502
    55 5z2e:A (1.8) BS01 PDC 1.17.1.8 GO:0000166 ... A0A3B6UER2 29786696
    56 5z2f:A (2.1) BS02 PDC 1.17.1.8 GO:0000166 ... A0A3B6UER2 29786696
    57 8s3a:E (1.85) BS01 PDC N/A N/A G7JYL4 39142482
    58 8s3a:F (1.85) BS01 PDC N/A N/A G7JYL4 39142482
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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