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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    2 1at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    3 1tu0:A (2.55) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    4 1tu0:C (2.55) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    5 1tug:A (2.1) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    6 1tug:C (2.1) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 15288791
    7 2a0f:A (2.9) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 16120448
    8 2at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    9 2at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    10 2hse:A (2.6) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 N/A
    11 2hse:C (2.6) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 N/A
    12 3at1:A (2.8) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902 PDBbind: -logKd/Ki=3.18, Ki=0.66mM
    13 3at1:C (2.8) BS01 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    14 4mv6:A (1.77) BS01 PCT 6.3.4.14 GO:0003824 ... P43873 26020841
    15 7at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2271529
    16 7at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2271529
    17 8at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2271529
    18 8at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2271529
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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