Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b09:A (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2 1b09:B (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    3 1b09:C (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    4 1b09:D (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    5 1b09:E (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    6 1h8p:A (1.82) BS01 PC ? GO:0005576 ... P02784 11937055
    7 1h8p:A (1.82) BS02 PC ? GO:0005576 ... P02784 11937055
    8 1h8p:B (1.82) BS01 PC ? GO:0005576 ... P02784 11937055
    9 1h8p:B (1.82) BS02 PC ? GO:0005576 ... P02784 11937055
    10 1o72:A (2.41) BS01 PC ? GO:0005576 ... P07845 14604522
    11 1o72:B (2.41) BS01 PC ? GO:0005576 ... P07845 14604522
    12 1wra:A (2.0) BS05 PC 3.1.4.38 N/A Q8DQ62 15908436
    13 1wra:B (2.0) BS05 PC 3.1.4.38 N/A Q8DQ62 15908436
    14 2bib:A (1.92) BS01 PC ? GO:0046872 ... Q8DQ62 15895092
    15 2ckq:A (2.4) BS01 PC 2.7.1.32
    2.7.1.82    		 N/A P35790 17007874
    16 2ckq:B (2.4) BS01 PC 2.7.1.32
    2.7.1.82    		 N/A P35790 17007874
    17 2mcp:H (3.1) BS01 PC ? GO:0002250 ... P01789 N/A
    18 2x6a:A (3.1) BS01 PC ? GO:0005242 ... D9N164 20564790
    19 2x6b:A (3.3) BS01 PC ? GO:0005242 ... D9N164 20564790
    20 2x6c:A (2.7) BS01 PC ? GO:0005242 ... D9N164 20564790
    21 3hia:A (2.38) BS01 PC ? N/A Q8DP99 N/A
    22 3hia:A (2.38) BS02 PC ? N/A Q8DP99 N/A
    23 3hia:B (2.38) BS01 PC ? N/A Q8DP99 N/A
    24 3hia:B (2.38) BS02 PC ? N/A Q8DP99 N/A
    25 3hia:C (2.38) BS01 PC ? N/A Q8DP99 N/A
    26 3hia:C (2.38) BS02 PC ? N/A Q8DP99 N/A
    27 3lkf:A (1.9) BS01 PC ? GO:0005576 ... P0A077 10048924
    28 3uj9:A (1.24) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 MOAD: Kd=23.4uM
    PDBbind: -logKd/Ki=4.63, Kd=23.4uM
    29 3ujc:A (1.19) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 MOAD: Kd=26uM
    PDBbind: -logKd/Ki=4.59, Kd=26uM
    30 3ujd:A (1.5) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 22117061 MOAD: Kd=20.2uM
    PDBbind: -logKd/Ki=4.69, Kd=20.2uM
    31 3usg:A (2.502) BS03 PC ? GO:0005886 ... O67854 22245965
    32 3usl:A (2.71) BS04 PC ? GO:0005886 ... O67854 22245965
    33 3usm:A (3.008) BS04 PC ? GO:0005886 ... O67854 22245965
    34 3zx7:A (2.84) BS01 PC ? GO:0005576 ... O18423 22819216
    35 3zx7:A (2.84) BS02 PC ? GO:0005576 ... O18423 22819216
    36 3zx7:A (2.84) BS03 PC ? GO:0005576 ... O18423 22819216
    37 3zx7:A (2.84) BS04 PC ? GO:0005576 ... O18423 22819216
    38 4bbj:A (2.75) BS03 PC 7.2.2.8 GO:0000166 ... Q5ZWR1 24317491
    39 4bes:A (2.54) BS02 PC 2.7.1.- N/A Q5ZXN6 23572077
    40 4clv:A (3.12) BS04 PC ? GO:0046686 ... Q44582 25258316
    41 4f8n:A (2.501) BS01 PC ? N/A P31522 23277582
    42 4nyt:A (2.25) BS01 PC ? N/A Q15485 25344472 MOAD: Kd=3.7mM
    PDBbind: -logKd/Ki=2.39, Kd=4.1mM
    43 4r6w:A (1.5894) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 25288796
    44 4r6w:B (1.5894) BS01 PC 2.1.1.103 GO:0000139 ... Q8IDQ9 25288796
    45 4tsl:A (1.6) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    46 4tsl:A (1.6) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    47 4tsl:B (1.6) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    48 4tsl:B (1.6) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    49 4tsn:A (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    50 4tsn:A (1.57) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    51 4tsn:A (1.57) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    52 4tsn:B (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    53 4tsn:B (1.57) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    54 4tsn:C (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    55 4tsn:D (1.57) BS01 PC ? GO:0005576 ... B9W5G6 25716479
    56 4tsn:D (1.57) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    57 4tsp:B (2.15) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    58 4tsq:A (1.6) BS06 PC ? GO:0005576 ... B9W5G6 25716479
    59 4tsq:A (1.6) BS07 PC ? GO:0005576 ... B9W5G6 25716479
    60 4tsq:C (1.6) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    61 4tsq:D (1.6) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    62 4tsq:E (1.6) BS04 PC ? GO:0005576 ... B9W5G6 25716479
    63 4tsq:E (1.6) BS05 PC ? GO:0005576 ... B9W5G6 25716479
    64 4tsq:F (1.6) BS02 PC ? GO:0005576 ... B9W5G6 25716479
    65 4tsq:F (1.6) BS03 PC ? GO:0005576 ... B9W5G6 25716479
    66 4zcr:A (1.8) BS01 PC 2.7.7.15 GO:0003824 ... Q8IEE9 30046154
    67 5a50:B (2.4) BS03 PC ? GO:0005096 ... Q9LVH4 26719420
    68 5a50:B (2.4) BS05 PC ? GO:0005096 ... Q9LVH4 26719420
    69 5egh:A (1.803) BS04 PC 3.1.4.-
    3.1.4.38    		 N/A Q8BGN3 26888014
    70 5egh:B (1.803) BS04 PC 3.1.4.-
    3.1.4.38    		 N/A Q8BGN3 26888014
    71 5ezm:A (2.7) BS13 PC 2.4.2.43 GO:0005886 ... Q1LDT6 26912703
    72 5fc5:A (1.678) BS03 PC 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 26792860
    73 5ffr:A (2.2) BS02 PC ? N/A P08427 27324153
    74 5i85:A (2.5) BS04 PC 3.1.4.12
    3.1.4.3    		 GO:0001778 ... P17405 27725636
    75 5kas:A (1.619) BS04 PC 3.1.4.- GO:0004767 ... P58242 27687724
    76 5tcd:A (2.4) BS03 PC 3.1.4.12 N/A Q6UWV6 28292932
    77 5wp4:A (1.341) BS02 PC 2.1.1.103 GO:0000234 ... Q9FR44 29084845
    78 5wp4:A (1.341) BS04 PC 2.1.1.103 GO:0000234 ... Q9FR44 29084845
    79 6c74:A (1.358) BS01 PC ? N/A Q6SJQ7 30194229
    80 6snc:L (3.2) BS02 PC N/A N/A N/A 31653484
    81 6snd:L (3.1) BS02 PC N/A N/A N/A 31653484
    82 6sne:A (3.9) BS01 PC N/A N/A N/A 31653484
    83 6sne:B (3.9) BS01 PC N/A N/A N/A 31653484
    84 6sne:C (3.9) BS01 PC N/A N/A N/A 31653484
    85 6sne:E (3.9) BS01 PC N/A N/A N/A 31653484
    86 6sne:H (3.9) BS01 PC N/A N/A N/A 31653484
    87 6sne:H (3.9) BS02 PC N/A N/A N/A 31653484
    88 6sne:J (3.9) BS01 PC ? GO:0005198 ... P04578 31653484
    89 6sne:L (3.9) BS01 PC N/A N/A N/A 31653484
    90 7pkd:A (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    91 7pkd:B (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    92 7pkd:C (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    93 7pkd:D (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    94 7pkd:E (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    95 7pkd:F (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    96 7pkd:G (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    97 7pkd:H (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    98 7pkd:I (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    99 7pkd:J (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    100 7pke:A (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    101 7pke:B (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    102 7pke:C (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    103 7pke:D (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    104 7pke:E (3.3) BS03 PC ? GO:0001849 ... P02741 34975846
    105 7pkh:A (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    106 7pkh:B (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    107 7pkh:C (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    108 7pkh:D (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    109 7pkh:E (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    110 7pkh:F (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    111 7pkh:G (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    112 7pkh:H (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    113 7pkh:I (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    114 7pkh:J (3.0) BS03 PC ? GO:0001849 ... P02741 34975846
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218