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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1afk:A (1.7) BS01 PAP 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=240nM
    PDBbind: -logKd/Ki=6.62, Ki=240nM
    2 1afk:B (1.7) BS01 PAP 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=240nM
    3 1m4d:A (1.8) BS03 PAP 2.3.1.- GO:0005886 ... P9WQG9 12161746
    4 1m4g:B (1.8) BS03 PAP 2.3.1.- GO:0005886 ... P9WQG9 12161746
    5 1m4i:A (1.5) BS03 PAP 2.3.1.- GO:0005886 ... P9WQG9 12161746
    6 3mgb:A (2.04) BS03 PAP 2.8.2.- GO:0005737 ... B7T1D7 20361791
    7 3mgb:B (2.04) BS01 PAP 2.8.2.- GO:0005737 ... B7T1D7 20361791
    8 5mex:A (1.92) BS01 PAP 2.8.2.38 GO:0005737 ... Q9C9C9 28646214
    9 6bml:B (2.95) BS03 PAP 2.3.1.-
    2.3.1.225    		 GO:0016409 ... Q5W0Z9 29326245
    10 6bmn:B (2.25) BS03 PAP 2.3.1.-
    2.3.1.225    		 GO:0016409 ... Q5W0Z9 29326245
    11 8a56:A (2.05) BS02 PAP ? GO:0000166 ... Q82ZQ9 36009332
    12 8a56:A (2.05) BS03 PAP ? GO:0000166 ... Q82ZQ9 36009332
    13 8a56:B (2.05) BS02 PAP ? GO:0000166 ... Q82ZQ9 36009332
    14 8a56:B (2.05) BS03 PAP ? GO:0000166 ... Q82ZQ9 36009332
    15 8oov:A (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    16 8oov:B (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    17 8oov:C (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    18 8vr7:B (1.9) BS04 PAP ? GO:0016740 ... Q1QD51 N/A
    19 8vr7:E (1.9) BS03 PAP ? GO:0016740 ... Q1QD51 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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