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BioLiP
Download all results in tab-seperated text for 94 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1acm:A (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 1303763
    2 1acm:C (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 1303763
    3 1d09:A (2.1) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10651286 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    4 1d09:C (2.1) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10651286 MOAD: Ki=27nM
    5 1ekx:A (1.95) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10805770
    6 1ekx:A (1.95) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 10805770
    7 1ekx:B (1.95) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10805770
    8 1ekx:B (1.95) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 10805770
    9 1ekx:C (1.95) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10805770
    10 1ekx:C (1.95) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 10805770
    11 1f1b:A (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10891088
    12 1f1b:C (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10891088
    13 1i5o:B (2.8) BS02 PAL ? GO:0005515 ... P0A7F3 11323717
    14 1ml4:A (1.8) BS01 PAL 2.1.3.2 GO:0004070 ... P77918 12547202
    15 1q95:A (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    16 1q95:B (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    17 1q95:B (2.46) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27nM
    18 1q95:C (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    19 1q95:C (2.46) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    20 1q95:D (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    21 1q95:E (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    22 1q95:E (2.46) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    23 1q95:F (2.46) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    24 1q95:F (2.46) BS02 PAL 2.1.3.2 GO:0004070 ... P0A786 15157075 MOAD: Ki=27nM
    25 1tth:A (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15288791
    26 1tth:C (2.8) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15288791
    27 1xjw:A (2.71) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15890205
    28 1xjw:C (2.71) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 15890205
    29 3r7l:A (2.585) BS01 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    30 3r7l:A (2.585) BS02 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    31 3r7l:B (2.585) BS01 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    32 3r7l:B (2.585) BS02 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    33 3r7l:C (2.585) BS01 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    34 3r7l:C (2.585) BS02 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    35 3r7l:D (2.585) BS01 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    36 3r7l:D (2.585) BS02 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    37 3r7l:E (2.585) BS01 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    38 3r7l:E (2.585) BS02 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    39 3r7l:F (2.585) BS01 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    40 3r7l:F (2.585) BS02 PAL 2.1.3.2 GO:0004070 ... P05654 21663747
    41 4bjh:B (2.2) BS01 PAL 2.1.3.2 GO:0004070 ... O66726 24314009
    42 4f04:A (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 22667327
    43 4f04:C (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 22667327
    44 4kgv:A (2.1) BS01 PAL N/A GO:0004070 ... N/A 24138583
    45 4kgv:C (2.1) BS01 PAL N/A GO:0004070 ... N/A 24138583
    46 4kgx:A (2.202) BS01 PAL N/A GO:0004070 ... N/A 24138583
    47 4kgx:C (2.202) BS01 PAL N/A GO:0004070 ... N/A 24138583
    48 4kgz:A (2.4) BS01 PAL N/A GO:0004070 ... N/A 24138583
    49 4kgz:C (2.4) BS01 PAL N/A GO:0004070 ... N/A 24138583
    50 4kh0:A (2.25) BS01 PAL N/A GO:0004070 ... N/A 24138583
    51 4kh0:C (2.25) BS01 PAL N/A GO:0004070 ... N/A 24138583
    52 4kh1:A (2.2) BS01 PAL N/A GO:0004070 ... N/A 24138583
    53 4kh1:C (2.2) BS01 PAL N/A GO:0004070 ... N/A 24138583
    54 5g1n:A (2.1) BS01 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    55 5g1n:A (2.1) BS02 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    56 5g1n:B (2.1) BS01 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    57 5g1n:B (2.1) BS02 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    58 5g1n:C (2.1) BS01 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    59 5g1n:C (2.1) BS02 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    60 5g1n:D (2.1) BS01 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    PDBbind: -logKd/Ki=7.77, Kd=0.017uM
    61 5g1n:D (2.1) BS02 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    PDBbind: -logKd/Ki=7.77, Kd=0.017uM
    62 5g1n:E (2.1) BS01 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    PDBbind: -logKd/Ki=7.77, Kd=0.017uM
    63 5g1n:E (2.1) BS02 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    PDBbind: -logKd/Ki=7.77, Kd=0.017uM
    64 5g1n:F (2.1) BS01 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    65 5g1n:F (2.1) BS02 PAL 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0004070 ... P27708 27265852 MOAD: Kd=0.017uM
    66 6jkt:A (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    67 6jkt:A (2.3) BS02 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    68 6jkt:B (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    69 6jkt:B (2.3) BS02 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    70 6jkt:C (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    71 6jkt:C (2.3) BS02 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    72 6jkt:D (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    73 6jkt:D (2.3) BS02 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    74 6jkt:E (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    75 6jkt:E (2.3) BS02 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    76 6jkt:F (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... O15636 N/A
    77 6pnz:A (2.27) BS01 PAL 2.1.3.2 GO:0004070 ... Q5HGN2 N/A
    78 6pnz:A (2.27) BS02 PAL 2.1.3.2 GO:0004070 ... Q5HGN2 N/A
    79 6pnz:B (2.27) BS01 PAL 2.1.3.2 GO:0004070 ... Q5HGN2 N/A
    80 6pnz:B (2.27) BS02 PAL 2.1.3.2 GO:0004070 ... Q5HGN2 N/A
    81 6pnz:C (2.27) BS01 PAL 2.1.3.2 GO:0004070 ... Q5HGN2 N/A
    82 6pnz:C (2.27) BS02 PAL 2.1.3.2 GO:0004070 ... Q5HGN2 N/A
    83 6ys6:B (1.55) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    84 6ys6:C (1.55) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    85 6ysp:B (1.38) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    86 6ysp:C (1.38) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    87 6yw9:A (1.68) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    88 6yw9:A (1.68) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    89 6yw9:B (1.68) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    90 6yw9:B (1.68) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    91 6yw9:C (1.68) BS01 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    92 6yw9:C (1.68) BS02 PAL 2.1.3.2 GO:0004070 ... P49077 33574254
    93 8atc:A (2.5) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 3066911
    94 8atc:C (2.5) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 3066911
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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