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BioLiP
Download all results in tab-seperated text for 82 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ew8:A (2.2) BS06 PAE 3.1.3.1 GO:0000287 ... P00634 10850800 MOAD: Ki=5.5mM
    PDBbind: -logKd/Ki=2.26, Ki=5.5mM
    2 1ew8:B (2.2) BS06 PAE 3.1.3.1 GO:0000287 ... P00634 10850800 MOAD: Ki=5.5mM
    3 3t02:A (2.0) BS03 PAE 3.6.1.9 GO:0016787 ... Q92UV8 22035792
    4 3tw6:C (2.4) BS04 PAE 6.4.1.1 GO:0003824 ... Q2K340 21958016
    5 4i3x:A (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    6 4i3x:B (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    7 4i3x:C (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    8 4i3x:D (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    9 4i3x:E (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    10 4i3x:F (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    11 4i3x:G (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    12 4i3x:H (2.07) BS02 PAE 1.2.1.- GO:0000166 ... Q92UV7 24361046
    13 8e7r:A (1.975) BS01 PAE 2.5.1.- GO:0000287 ... Q739M9 37252104
    14 8e7r:A (1.975) BS03 PAE 2.5.1.- GO:0000287 ... Q739M9 37252104
    15 8e7r:B (1.975) BS01 PAE 2.5.1.- GO:0000287 ... Q739M9 37252104
    16 8e7r:B (1.975) BS02 PAE 2.5.1.- GO:0000287 ... Q739M9 37252104
    17 8i8j:A (2.07) BS02 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    18 8i8j:B (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    19 8i8j:C (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    20 8i8j:D (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    21 8i8j:E (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    22 8i8j:F (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    23 8i8k:A () BS02 PAE 2.7.7.3 N/A N/A N/A
    24 8i8k:B () BS01 PAE 2.7.7.3 N/A N/A N/A
    25 8i8k:C () BS01 PAE 2.7.7.3 N/A N/A N/A
    26 8i8k:D () BS01 PAE 2.7.7.3 N/A N/A N/A
    27 8i8k:E () BS01 PAE 2.7.7.3 N/A N/A N/A
    28 8i8k:F () BS01 PAE 2.7.7.3 N/A N/A N/A
    29 8i8l:A () BS02 PAE 2.7.7.3 N/A N/A N/A
    30 8i8l:B () BS01 PAE 2.7.7.3 N/A N/A N/A
    31 8i8l:C () BS01 PAE 2.7.7.3 N/A N/A N/A
    32 8i8l:D () BS01 PAE 2.7.7.3 N/A N/A N/A
    33 8i8l:E () BS01 PAE 2.7.7.3 N/A N/A N/A
    34 8i8l:F () BS01 PAE 2.7.7.3 N/A N/A N/A
    35 8i8m:A () BS02 PAE N/A N/A N/A N/A
    36 8i8m:B () BS01 PAE N/A N/A N/A N/A
    37 8i8m:C () BS01 PAE N/A N/A N/A N/A
    38 8i8m:D () BS01 PAE N/A N/A N/A N/A
    39 8i8m:E () BS01 PAE N/A N/A N/A N/A
    40 8i8m:F () BS01 PAE N/A N/A N/A N/A
    41 8i8n:A () BS01 PAE 2.7.7.3 N/A N/A N/A
    42 8i8n:B () BS01 PAE 2.7.7.3 N/A N/A N/A
    43 8i8n:C () BS01 PAE 2.7.7.3 N/A N/A N/A
    44 8i8n:D () BS01 PAE 2.7.7.3 N/A N/A N/A
    45 8i8n:E () BS01 PAE 2.7.7.3 N/A N/A N/A
    46 8i8n:F () BS01 PAE 2.7.7.3 N/A N/A N/A
    47 8i8o:A () BS01 PAE N/A N/A N/A N/A
    48 8i8o:B () BS01 PAE N/A N/A N/A N/A
    49 8i8o:C () BS01 PAE N/A N/A N/A N/A
    50 8i8o:D () BS01 PAE N/A N/A N/A N/A
    51 8i8o:E () BS01 PAE N/A N/A N/A N/A
    52 8i8o:F () BS01 PAE N/A N/A N/A N/A
    53 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    54 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    55 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    56 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    57 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    58 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    59 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    60 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    61 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    62 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    63 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    64 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    65 9iye:A (2.39) BS01 PAE N/A N/A A4W515 N/A
    66 9iye:B (2.39) BS01 PAE N/A N/A A4W515 N/A
    67 9iye:C (2.39) BS01 PAE N/A N/A A4W515 N/A
    68 9iye:D (2.39) BS01 PAE N/A N/A A4W515 N/A
    69 9iye:E (2.39) BS01 PAE N/A N/A A4W515 N/A
    70 9iye:F (2.39) BS01 PAE N/A N/A A4W515 N/A
    71 9iyf:A (2.37) BS01 PAE N/A N/A A4W515 N/A
    72 9iyf:B (2.37) BS01 PAE N/A N/A A4W515 N/A
    73 9iyf:C (2.37) BS01 PAE N/A N/A A4W515 N/A
    74 9iyf:D (2.37) BS01 PAE N/A N/A A4W515 N/A
    75 9iyf:E (2.37) BS01 PAE N/A N/A A4W515 N/A
    76 9iyf:F (2.37) BS01 PAE N/A N/A A4W515 N/A
    77 9iyh:A (2.25) BS01 PAE N/A N/A A4W515 N/A
    78 9iyh:B (2.25) BS01 PAE N/A N/A A4W515 N/A
    79 9iyh:C (2.25) BS01 PAE N/A N/A A4W515 N/A
    80 9iyh:D (2.25) BS01 PAE N/A N/A A4W515 N/A
    81 9iyh:E (2.25) BS01 PAE N/A N/A A4W515 N/A
    82 9iyh:F (2.25) BS01 PAE N/A N/A A4W515 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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