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BioLiP
Download all results in tab-seperated text for 928 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7nem:M (1.35) BS05 OXY 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    802 7nkz:A (2.5) BS01 OXY ? GO:0005886 ... L7N662 34475399
    803 7o65:A (1.7) BS05 OXY 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    804 7o66:A (1.6) BS01 OXY 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    805 7o67:A (1.86) BS01 OXY 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    806 7o68:A (1.68) BS05 OXY 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    807 7o9j:A (1.7) BS02 OXY ? GO:0004601 ... Q556V8 34200865
    808 7o9j:B (1.7) BS02 OXY ? GO:0004601 ... Q556V8 34200865
    809 7odz:A (1.6) BS04 OXY ? GO:0004601 ... Q556V8 34200865
    810 7odz:B (1.6) BS04 OXY ? GO:0004601 ... Q556V8 34200865
    811 7opt:A (2.02) BS02 OXY 1.11.1.5 GO:0000302 ... Q8I1N3 35772495
    812 7oqr:B (1.76) BS02 OXY 1.11.1.5 GO:0000302 ... Q8I1N3 35772495
    813 7oy2:C (2.06) BS05 OXY 7.1.1.3 GO:0005886 ... P26459 34873041
    814 7pes:B (1.75) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    815 7pes:C (1.75) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    816 7pes:E (1.75) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    817 7pes:F (1.75) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    818 7ptm:A (1.85) BS03 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    819 7ptm:A (1.85) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    820 7ptm:B (1.85) BS03 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    821 7ptm:B (1.85) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    822 7ptm:C (1.85) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    823 7ptm:C (1.85) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    824 7ptm:D (1.85) BS03 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    825 7ptm:D (1.85) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    826 7ptm:E (1.85) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    827 7ptm:F (1.85) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    828 7puh:A (1.3) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    829 7puh:A (1.3) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    830 7puh:B (1.3) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    831 7puh:B (1.3) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    832 7puh:C (1.3) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    833 7puh:C (1.3) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    834 7puh:D (1.3) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    835 7puh:D (1.3) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    836 7puh:E (1.3) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    837 7puh:E (1.3) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    838 7puh:F (1.3) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    839 7puh:F (1.3) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    840 7qr6:A (2.9) BS02 OXY 1.13.11.- GO:0010436 ... Q2GA76 35687874
    841 7qr6:B (2.9) BS02 OXY 1.13.11.- GO:0010436 ... Q2GA76 35687874
    842 7qr6:C (2.9) BS02 OXY 1.13.11.- GO:0010436 ... Q2GA76 35687874
    843 7r0f:A (1.978) BS05 OXY ? GO:0005506 ... Q46877 N/A
    844 7r0f:B (1.978) BS05 OXY ? GO:0005506 ... Q46877 N/A
    845 7r1j:A (1.901) BS05 OXY ? GO:0005506 ... Q46877 N/A
    846 7r2r:A (2.198) BS05 OXY ? GO:0005506 ... Q46877 N/A
    847 7r2r:B (2.198) BS05 OXY ? GO:0005506 ... Q46877 N/A
    848 7t5d:A (2.4) BS03 OXY 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    849 7ud8:B (1.8) BS01 OXY ? GO:0004601 ... P68871 35625623
    850 7ud8:C (1.8) BS01 OXY ? GO:0004601 ... P69905 35625623
    851 7ud8:D (1.8) BS01 OXY ? GO:0004601 ... P68871 35625623
    852 7vlc:A (2.2) BS02 OXY ? GO:0005344 ... S0BBU7 35797404
    853 7vlc:B (2.2) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    854 7vlc:C (2.2) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    855 7vlc:D (2.2) BS03 OXY ? GO:0005344 ... S0BAP9 35797404
    856 7vlc:E (2.2) BS02 OXY ? GO:0005344 ... S0BBU7 35797404
    857 7vlc:F (2.2) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    858 7vlc:G (2.2) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    859 7vlc:H (2.2) BS03 OXY ? GO:0005344 ... S0BAP9 35797404
    860 7vld:A (2.1) BS02 OXY ? GO:0005344 ... S0BBU7 35797404
    861 7vld:B (2.1) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    862 7vld:C (2.1) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    863 7vld:D (2.1) BS03 OXY ? GO:0005344 ... S0BAP9 35797404
    864 7vld:E (2.1) BS02 OXY ? GO:0005344 ... S0BBU7 35797404
    865 7vld:F (2.1) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    866 7vld:G (2.1) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    867 7vld:H (2.1) BS03 OXY ? GO:0005344 ... S0BAP9 35797404
    868 7vle:A (2.3) BS02 OXY ? GO:0005344 ... S0BBU7 35797404
    869 7vle:B (2.3) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    870 7vle:C (2.3) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    871 7vle:D (2.3) BS03 OXY ? GO:0005344 ... S0BAP9 35797404
    872 7vle:E (2.3) BS02 OXY ? GO:0005344 ... S0BBU7 35797404
    873 7vle:F (2.3) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    874 7vle:G (2.3) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    875 7vle:H (2.3) BS03 OXY ? GO:0005344 ... S0BAP9 35797404
    876 7vlf:C (2.4) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    877 7vlf:D (2.4) BS02 OXY ? GO:0005344 ... S0BAP9 35797404
    878 7vlf:F (2.4) BS02 OXY ? GO:0001666 ... S0BBR6 35797404
    879 7vlf:G (2.4) BS02 OXY ? GO:0001666 ... S0BCU7 35797404
    880 7zn6:A (1.9) BS01 OXY 1.-.-.- GO:0005507 ... G2QFD0 37326583
    881 8aip:A (2.35) BS03 OXY N/A GO:0005507 ... N/A 38105031
    882 8aq6:A (1.69) BS01 OXY 1.13.12.13 GO:0005576 ... Q9GV45 38030625
    883 8djw:A (1.8) BS02 OXY 1.11.1.11 GO:0000302 ... C5WNL8 36575825
    884 8jpz:A (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    885 8jpz:B (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    886 8ofk:DDD (1.713) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    887 8oh8:AAA (2.12) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    888 8oh8:DDD (2.12) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    889 8oih:AAA (1.86) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    890 8oih:DDD (1.86) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    891 8oiw:AAA (1.89) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    892 8oiw:BBB (1.89) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    893 8oiw:CCC (1.89) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    894 8oiw:DDD (1.89) BS02 OXY 1.7.3.3 GO:0005777 ... A0A8V0ZED1 37695804
    895 8oro:AAA (2.0) BS02 OXY 1.13.11.48 GO:0003824 ... O31266 37799987
    896 8oro:BBB (2.0) BS02 OXY 1.13.11.48 GO:0003824 ... O31266 37799987
    897 8p9u:A (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    898 8p9u:A (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    899 8p9u:B (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    900 8p9u:B (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    901 8p9u:C (2.0) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    902 8p9u:C (2.0) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    903 8p9u:D (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    904 8p9u:E (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    905 8p9u:F (2.0) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    906 8p9u:F (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    907 8p9v:A (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    908 8p9v:A (2.2) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    909 8p9v:B (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    910 8p9v:C (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    911 8p9v:D (2.2) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    912 8p9v:F (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    913 8p9v:F (2.2) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    914 8py7:A (1.49) BS02 OXY N/A N/A P05326 N/A
    915 8py8:A (1.46) BS03 OXY N/A N/A P05326 N/A
    916 8py9:A (1.5) BS02 OXY N/A N/A P05326 N/A
    917 8pya:A (1.5) BS02 OXY N/A N/A P05326 N/A
    918 8q9x:A (1.05) BS01 OXY ? GO:0046872 ... A0A5C7ETD9 N/A
    919 8rc9:A (2.06) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    920 8rcb:A (2.11) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    921 8vsk:AAA (1.515) BS02 OXY N/A GO:0004601 ... Q9NAV8 38959050
    922 8vzr:A (1.64) BS03 OXY N/A GO:0004601 ... Q9NAV8 38959050
    923 8vzr:B (1.64) BS03 OXY N/A GO:0004601 ... Q9NAV8 38959050
    924 8w95:b (2.03) BS04 OXY N/A N/A A0A173CSP7 N/A
    925 8wiy:A (2.31) BS02 OXY N/A N/A P01999 39090102
    926 8wiy:B (2.31) BS02 OXY N/A N/A P02130 39090102
    927 8wj1:A (2.27) BS02 OXY N/A N/A P69905 39090102
    928 8wj1:B (2.27) BS02 OXY N/A N/A P68871 39090102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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