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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 928 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3aq5:A (1.78) BS02 OXY ? GO:0005344 ... P17724 21298303
    202 3aq5:B (1.78) BS02 OXY ? GO:0005344 ... P17724 21298303
    203 3b75:A (2.3) BS02 OXY ? GO:0004601 ... P69905 N/A
    204 3b75:B (2.3) BS03 OXY ? GO:0004601 ... P68871 N/A
    205 3b75:D (2.3) BS02 OXY ? GO:0004601 ... P68871 N/A
    206 3b75:E (2.3) BS02 OXY ? GO:0004601 ... P69905 N/A
    207 3b75:G (2.3) BS02 OXY ? GO:0004601 ... P69905 N/A
    208 3b75:T (2.3) BS02 OXY ? GO:0004601 ... P68871 N/A
    209 3bcq:B (2.4) BS02 OXY ? GO:0004601 ... D0VWS2 N/A
    210 3bcq:D (2.4) BS02 OXY ? GO:0004601 ... D0VWS2 N/A
    211 3cks:A (1.7) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 18375516
    212 3dkh:A (2.4) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 19780817
    213 3dkh:B (2.4) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 19780817
    214 3eee:A (2.12) BS02 OXY ? GO:0020037 ... Q8RBX6 19032091
    215 3fs4:B (2.22) BS02 OXY ? GO:0004601 ... P02123 33950023
    216 3fs4:D (2.22) BS02 OXY ? GO:0004601 ... P02123 33950023
    217 3fu7:A (1.67) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    218 3fu7:B (1.67) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    219 3gke:B (1.75) BS03 OXY 1.14.15.- GO:0004497 ... Q5S3I3 19616011
    220 3gl0:B (1.75) BS03 OXY 1.14.15.- GO:0004497 ... Q5S3I3 19616011
    221 3ic0:B (1.8) BS01 OXY ? GO:0004601 ... P68871 N/A
    222 3ic0:D (1.8) BS02 OXY ? GO:0004601 ... P68871 N/A
    223 3ic2:A (2.4) BS01 OXY ? GO:0004601 ... P69905 N/A
    224 3ic2:D (2.4) BS01 OXY ? GO:0004601 ... P68871 N/A
    225 3iqb:A (2.1) BS02 OXY ? GO:0020037 ... Q8RBX6 20017169
    226 3ixf:A (1.58) BS02 OXY ? GO:0004601 ... Q9NAV7 20445228
    227 3lgn:A (1.5) BS02 OXY 1.14.99.48 GO:0004392 ... Q7A827 20180905
    228 3lgn:B (1.5) BS02 OXY 1.14.99.48 GO:0004392 ... Q7A827 20180905
    229 3lqd:D (2.8) BS02 OXY ? GO:0004601 ... P08535 N/A
    230 3npe:A (3.2) BS02 OXY 1.13.11.51 GO:0016702 ... O24592 20884803
    231 3nvr:A (2.148) BS02 OXY ? GO:0020037 ... Q8RBX6 20735135
    232 3nvr:B (2.148) BS02 OXY ? GO:0020037 ... Q8RBX6 20735135
    233 3nvu:A (2.038) BS02 OXY ? GO:0020037 ... Q8RBX6 20735135
    234 3nvu:B (2.038) BS02 OXY ? GO:0020037 ... Q8RBX6 20735135
    235 3o72:A (1.95) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q8XAS4 21324904
    236 3o72:B (1.95) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q8XAS4 21324904
    237 3o72:C (1.95) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q8XAS4 21324904
    238 3o72:D (1.95) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q8XAS4 21324904
    239 3pi3:B (1.95) BS02 OXY ? GO:0019825 ... P41261 N/A
    240 3pps:A (2.5) BS05 OXY 1.10.3.2 GO:0005507 ... F6N9E7 21535408
    241 3pt7:B (2.15) BS02 OXY ? GO:0001666 ... P41262 N/A
    242 3qm5:A (0.91) BS02 OXY ? GO:0005344 ... H3JQV6 N/A
    243 3r5i:A (2.2) BS01 OXY ? GO:0004601 ... P69905 N/A
    244 3r5i:B (2.2) BS01 OXY ? GO:0004601 ... P68871 N/A
    245 3r5i:C (2.2) BS02 OXY ? GO:0004601 ... P69905 N/A
    246 3r5i:D (2.2) BS01 OXY ? GO:0004601 ... P68871 N/A
    247 3s1i:B (1.77) BS02 OXY ? GO:0001666 ... B3DUZ7 21925500
    248 3s1i:C (1.77) BS02 OXY ? GO:0001666 ... B3DUZ7 21925500
    249 3t6w:A (2.15) BS05 OXY 1.10.3.2 GO:0005507 ... I1SB14 22341982
    250 3t6w:B (2.15) BS05 OXY 1.10.3.2 GO:0005507 ... I1SB14 22341982
    251 3t6w:C (2.15) BS05 OXY 1.10.3.2 GO:0005507 ... I1SB14 22341982
    252 3tas:A (2.3) BS05 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    253 3tas:A (2.3) BS06 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    254 3tas:B (2.3) BS01 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    255 3tas:B (2.3) BS06 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    256 3tas:C (2.3) BS06 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    257 3tas:C (2.3) BS07 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    258 3tbb:A (2.3) BS05 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    259 3tbb:A (2.3) BS06 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    260 3tbb:B (2.3) BS01 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    261 3tbb:B (2.3) BS06 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    262 3tbb:C (2.3) BS01 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    263 3tbb:C (2.3) BS06 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    264 3tbc:A (2.7) BS04 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    265 3tbc:A (2.7) BS05 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    266 3tbc:B (2.7) BS01 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    267 3tbc:C (2.7) BS04 OXY 1.10.3.2 GO:0005507 ... J9PBR2 24870309
    268 3tf0:A (1.743) BS02 OXY ? GO:0020037 ... Q8RBX6 21997213
    269 3tf0:B (1.743) BS02 OXY ? GO:0020037 ... Q8RBX6 21997213
    270 3tf1:A (2.0369) BS02 OXY ? GO:0020037 ... Q8RBX6 21997213
    271 3tf1:B (2.0369) BS02 OXY ? GO:0020037 ... Q8RBX6 21997213
    272 3ubc:G (1.65) BS02 OXY ? GO:0001666 ... B3DUZ7 22415930
    273 3v9c:A (2.0) BS03 OXY 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    274 3vmh:A (1.85) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 22727022
    275 3vmh:B (1.85) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 22727022
    276 3vmh:C (1.85) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 22727022
    277 3vmi:A (2.0) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 22727022
    278 3vmi:B (2.0) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 22727022
    279 3vmi:C (2.0) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 22727022
    280 3wa2:X (1.08) BS11 OXY 1.4.3.21 GO:0005507 ... P46881 24311589
    281 3wa2:X (1.08) BS12 OXY 1.4.3.21 GO:0005507 ... P46881 24311589
    282 3wa2:X (1.08) BS13 OXY 1.4.3.21 GO:0005507 ... P46881 24311589
    283 3wct:A (2.4) BS02 OXY ? GO:0005344 ... S0BBU7 25004960
    284 3wct:B (2.4) BS02 OXY ? GO:0001666 ... S0BBR6 25004960
    285 3wct:C (2.4) BS02 OXY ? GO:0001666 ... S0BCU7 25004960
    286 3wct:D (2.4) BS02 OXY ? GO:0005344 ... S0BAP9 25004960
    287 3wct:E (2.4) BS02 OXY ? GO:0005344 ... S0BBU7 25004960
    288 3wct:F (2.4) BS02 OXY ? GO:0001666 ... S0BBR6 25004960
    289 3wct:G (2.4) BS02 OXY ? GO:0001666 ... S0BCU7 25004960
    290 3wct:H (2.4) BS03 OXY ? GO:0005344 ... S0BAP9 25004960
    291 3wcv:A (2.6) BS02 OXY ? GO:0005344 ... S0BBU7 25004960
    292 3wcv:B (2.6) BS02 OXY ? GO:0001666 ... S0BBR6 25004960
    293 3wcv:C (2.6) BS02 OXY ? GO:0001666 ... S0BCU7 25004960
    294 3wcv:D (2.6) BS03 OXY ? GO:0005344 ... S0BAP9 25004960
    295 3wcv:E (2.6) BS02 OXY ? GO:0005344 ... S0BBU7 25004960
    296 3wcv:F (2.6) BS02 OXY ? GO:0001666 ... S0BBR6 25004960
    297 3wcv:G (2.6) BS02 OXY ? GO:0001666 ... S0BCU7 25004960
    298 3wcv:H (2.6) BS03 OXY ? GO:0005344 ... S0BAP9 25004960
    299 3wcw:A (2.5) BS02 OXY ? GO:0005344 ... S0BBU7 25004960
    300 3wcw:B (2.5) BS02 OXY ? GO:0001666 ... S0BBR6 25004960
    301 3wcw:C (2.5) BS02 OXY ? GO:0001666 ... S0BCU7 25004960
    302 3wcw:D (2.5) BS02 OXY ? GO:0005344 ... S0BAP9 25004960
    303 3wcw:E (2.5) BS02 OXY ? GO:0005344 ... S0BBU7 25004960
    304 3wcw:F (2.5) BS02 OXY ? GO:0001666 ... S0BBR6 25004960
    305 3wcw:G (2.5) BS02 OXY ? GO:0001666 ... S0BCU7 25004960
    306 3wcw:H (2.5) BS03 OXY ? GO:0005344 ... S0BAP9 25004960
    307 3whm:A (1.85) BS03 OXY ? GO:0004601 ... P69905 25287606
    308 3whm:B (1.85) BS03 OXY ? GO:0004601 ... P68871 25287606
    309 3wtg:A (2.3) BS02 OXY ? GO:0004601 ... C6L8R0 N/A
    310 3wtg:B (2.3) BS02 OXY ? GO:0004601 ... A0A075B5G0 N/A
    311 3wtg:D (2.3) BS02 OXY ? GO:0004601 ... A0A075B5G0 N/A
    312 3zds:C (1.7) BS01 OXY 1.13.11.5 GO:0000976 ... Q88E47 23858455
    313 3zdw:A (2.4) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 14764581
    314 3zx1:A (1.95) BS05 OXY 1.10.3.- GO:0005507 ... A0A0H3PBA4 22127520
    315 4ako:A (1.7) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 20200715
    316 4akp:A (2.0) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 20200715
    317 4akq:A (2.1) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 20200715
    318 4b4y:A (2.3) BS02 OXY ? GO:0001666 ... L7MTK4 23288852
    319 4cw3:A (1.34) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 25314114
    320 4cw6:A (1.28) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 25314114
    321 4d17:A (1.3) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 25314114
    322 4d19:A (1.35) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 25314114
    323 4e9w:A (1.45) BS03 OXY ? GO:0005507 ... C0STU6 24598746
    324 4e9w:A (1.45) BS06 OXY ? GO:0005507 ... C0STU6 24598746
    325 4e9w:B (1.45) BS01 OXY ? GO:0005507 ... C0STU6 24598746
    326 4e9w:B (1.45) BS07 OXY ? GO:0005507 ... C0STU6 24598746
    327 4e9w:C (1.45) BS01 OXY ? GO:0005507 ... C0STU6 24598746
    328 4e9w:C (1.45) BS07 OXY ? GO:0005507 ... C0STU6 24598746
    329 4e9x:A (1.14) BS05 OXY ? GO:0005507 ... C0STU6 24598746
    330 4e9x:A (1.14) BS06 OXY ? GO:0005507 ... C0STU6 24598746
    331 4e9x:B (1.14) BS03 OXY ? GO:0005507 ... C0STU6 24598746
    332 4e9x:B (1.14) BS06 OXY ? GO:0005507 ... C0STU6 24598746
    333 4e9x:C (1.14) BS01 OXY ? GO:0005507 ... C0STU6 24598746
    334 4e9x:C (1.14) BS02 OXY ? GO:0005507 ... C0STU6 24598746
    335 4e9y:A (1.5) BS05 OXY ? GO:0005507 ... C0STU6 24598746
    336 4e9y:A (1.5) BS06 OXY ? GO:0005507 ... C0STU6 24598746
    337 4e9y:B (1.5) BS03 OXY ? GO:0005507 ... C0STU6 24598746
    338 4e9y:B (1.5) BS06 OXY ? GO:0005507 ... C0STU6 24598746
    339 4e9y:C (1.5) BS01 OXY ? GO:0005507 ... C0STU6 24598746
    340 4e9y:C (1.5) BS04 OXY ? GO:0005507 ... C0STU6 24598746
    341 4eir:B (1.1) BS02 OXY 1.14.99.56 GO:0004497 ... Q1K8B6 22578542
    342 4enz:A (2.6) BS07 OXY 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 23843990
    343 4f4o:E (2.9) BS02 OXY ? GO:0004601 ... P02067 22922649
    344 4f68:A (1.8) BS02 OXY ? GO:0005344 ... O76242 N/A
    345 4f6d:A (1.8) BS02 OXY ? GO:0005344 ... O76242 N/A
    346 4f6i:A (1.56) BS02 OXY ? GO:0005344 ... O76242 N/A
    347 4fdk:A (2.1) BS02 OXY ? GO:0020037 ... Q8RBX6 23831583
    348 4fdk:B (2.1) BS02 OXY ? GO:0020037 ... Q8RBX6 23831583
    349 4fh6:A (1.44) BS03 OXY ? GO:0004601 ... Q9NAV8 23480178
    350 4fh6:B (1.44) BS03 OXY ? GO:0004601 ... Q9NAV8 23480178
    351 4fh7:A (1.74) BS03 OXY ? GO:0004601 ... Q9NAV8 23480178
    352 4g7l:A (1.8) BS02 OXY 1.14.14.18 GO:0001525 ... P06762 23043644
    353 4g8u:A (2.1) BS02 OXY 1.14.14.18 GO:0001525 ... P06762 23043644
    354 4g8w:A (2.4) BS02 OXY 1.14.14.18 GO:0001525 ... P06762 23043644
    355 4g8w:A (2.4) BS03 OXY 1.14.14.18 GO:0001525 ... P06762 23043644
    356 4ghf:C (1.67) BS03 OXY 1.13.11.15 GO:0046872 ... Q45135 23066739
    357 4ghf:D (1.67) BS03 OXY 1.13.11.15 GO:0046872 ... Q45135 23066739
    358 4gs1:A (1.7) BS02 OXY 1.11.1.19 GO:0004601 ... U3KRF5 N/A
    359 4gs1:B (1.7) BS02 OXY 1.11.1.19 GO:0004601 ... U3KRF5 N/A
    360 4gt2:A (1.8) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q9ZBW9 N/A
    361 4gt2:B (1.8) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q9ZBW9 N/A
    362 4gt2:E (1.8) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q9ZBW9 N/A
    363 4gt2:G (1.8) BS02 OXY 1.11.1.-
    4.98.1.1    		 GO:0004325 ... Q9ZBW9 N/A
    364 4h0b:A (1.26) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 23192025
    365 4ilz:A (1.91) BS06 OXY ? GO:0004601 ... Q9NAV8 23480178
    366 4j3p:A (2.5) BS03 OXY 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    367 4j3r:A (2.2) BS03 OXY 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    368 4kjt:A (1.44) BS02 OXY ? GO:0004601 ... Q9NAV8 24440609
    369 4kmv:A (1.44) BS02 OXY ? GO:0004601 ... Q9NAV8 23952341
    370 4mqj:F (1.8) BS02 OXY ? GO:0004601 ... P69892 N/A
    371 4nbb:A (2.05) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 24584240
    372 4nbb:B (2.05) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 24584240
    373 4nbb:C (2.05) BS03 OXY 1.14.12.22 GO:0046872 ... Q84II6 24584240
    374 4op6:A (1.65) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 24657440
    375 4q8b:A (1.91) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    376 4qma:A (1.65) BS02 OXY ? GO:0005506 ... Q46R41 25307852
    377 4qur:A (1.759) BS04 OXY 1.-.-.- GO:0005506 ... Q92ZP9 N/A
    378 4wch:D (2.05) BS02 OXY ? GO:0001666 ... A0A0M3KKZ2 26057666
    379 4wjg:B (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    380 4wjg:G (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    381 4wjg:L (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    382 4wjg:Q (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    383 4wjg:U (3.1) BS02 OXY ? GO:0004601 ... P69905 25410714
    384 4wjg:V (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    385 4wwz:B (1.8) BS03 OXY ? GO:0046872 ... Q4K8M0 25489112
    386 4x0l:A (2.05) BS02 OXY ? GO:0004601 ... P69905 25497229
    387 4x0l:B (2.05) BS02 OXY ? GO:0004601 ... P68871 25497229
    388 4y08:A (1.34) BS04 OXY 1.16.3.1 GO:0004322 ... P02794 26327381
    389 4y08:A (1.34) BS05 OXY 1.16.3.1 GO:0004322 ... P02794 26327381
    390 4yu3:A (2.45) BS02 OXY ? GO:0004601 ... A0A0R4I977 N/A
    391 4yu3:B (2.45) BS02 OXY ? GO:0004601 ... A0A0R4I978 N/A
    392 4ztt:C (1.83) BS03 OXY 1.16.3.2 GO:0004322 ... P0A998 27777002
    393 5ee4:C (2.3) BS02 OXY ? GO:0004601 ... P69905 26671256
    394 5ee4:F (2.3) BS02 OXY ? GO:0004601 ... P68871 26671256
    395 5flj:C (1.818) BS03 OXY 1.13.11.24 N/A A2VA43 26846734
    396 5flj:F (1.818) BS03 OXY 1.13.11.24 N/A A2VA43 26846734
    397 5frc:A (1.443) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 N/A
    398 5fsj:A (1.201) BS07 OXY 3.4.24.27 GO:0004222 ... P00800 N/A
    399 5hu6:A (2.9) BS02 OXY ? GO:0004601 ... P69905 25497229
    400 5hu6:B (2.9) BS02 OXY ? GO:0004601 ... P68871 25497229
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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