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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 928 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a4f:B (2.0) BS02 OXY ? GO:0004601 ... P02118 8568892
    2 1a6m:A (1.0) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10512835
    3 1dp6:A (2.3) BS01 OXY 2.7.13.3 GO:0006355 ... P23222 10747783
    4 1f65:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10049310
    5 1faw:B (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    6 1faw:D (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    7 1gw0:A (2.4) BS03 OXY 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    8 1gw0:B (2.4) BS03 OXY 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    9 1gzx:A (2.1) BS02 OXY ? GO:0004601 ... P69905 8642597
    10 1gzx:B (2.1) BS02 OXY ? GO:0004601 ... P68871 8642597
    11 1gzx:C (2.1) BS02 OXY ? GO:0004601 ... P69905 8642597
    12 1gzx:D (2.1) BS02 OXY ? GO:0004601 ... P68871 8642597
    13 1h57:A (1.6) BS04 OXY 1.11.1.7 GO:0004601 ... P00433 12024218
    14 1hbi:A (1.7) BS02 OXY ? GO:0001666 ... P02213 7929217
    15 1hbi:B (1.7) BS03 OXY ? GO:0001666 ... P02213 7929217
    16 1hgc:A (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    17 1hgc:C (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    18 1hho:A (2.1) BS02 OXY ? GO:0004601 ... P69905 6644819
    19 1hho:B (2.1) BS02 OXY ? GO:0004601 ... P68871 6644819
    20 1hmo:A (2.0) BS02 OXY ? GO:0005344 ... P02246 2016748
    21 1hmo:B (2.0) BS02 OXY ? GO:0005344 ... P02246 2016748
    22 1hmo:C (2.0) BS02 OXY ? GO:0005344 ... P02246 2016748
    23 1hmo:D (2.0) BS02 OXY ? GO:0005344 ... P02246 2016748
    24 1j30:A (1.7) BS03 OXY ? GO:0016491 ... F9VPE5 14529281
    25 1j30:A (1.7) BS04 OXY ? GO:0016491 ... F9VPE5 14529281
    26 1j30:B (1.7) BS01 OXY ? GO:0016491 ... F9VPE5 14529281
    27 1j30:B (1.7) BS04 OXY ? GO:0016491 ... F9VPE5 14529281
    28 1kr7:A (1.5) BS02 OXY ? GO:0005344 ... O76242 12015154
    29 1ls1:A (1.1) BS01 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    30 1ls1:A (1.1) BS02 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    31 1ltw:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    32 1mbo:A (1.6) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 7463482
    33 1mno:A (1.95) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02189 9843395
    34 1mno:B (1.95) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02189 9843395
    35 1mxt:A (0.95) BS02 OXY 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P12676 12595270
    36 1n4u:A (0.95) BS02 OXY 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P12676 16604066
    37 1o7m:A (1.75) BS01 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    38 1o7n:A (1.4) BS02 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    39 1of0:A (2.45) BS04 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    40 1oqu:A (2.0) BS04 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    41 1oqu:C (2.0) BS06 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    42 1oqu:D (2.0) BS04 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    43 1oxy:A (2.4) BS03 OXY ? GO:0005344 ... P04253 7984626
    44 1qpw:C (1.8) BS02 OXY ? GO:0004601 ... P01965 10713517
    45 1qwl:A (1.6) BS02 OXY 1.11.1.6 GO:0004096 ... P77872 15023060
    46 1qxe:A (1.85) BS01 OXY ? GO:0004601 ... P69905 15341482
    47 1qxe:C (1.85) BS01 OXY ? GO:0004601 ... P69905 15341482
    48 1qxe:D (1.85) BS01 OXY ? GO:0004601 ... P68871 15341482
    49 1rzc:A (1.9) BS02 OXY 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15299481
    50 1thb:A (1.5) BS02 OXY ? GO:0004601 ... P69905 2383372
    51 1thb:C (1.5) BS02 OXY ? GO:0004601 ... P69905 2383372
    52 1u4h:A (2.07) BS02 OXY ? GO:0020037 ... Q8RBX6 15326296
    53 1u4h:B (2.07) BS02 OXY ? GO:0020037 ... Q8RBX6 15326296
    54 1u55:A (1.77) BS02 OXY ? GO:0020037 ... Q8RBX6 15326296
    55 1u55:B (1.77) BS02 OXY ? GO:0020037 ... Q8RBX6 15326296
    56 1v07:A (1.7) BS02 OXY ? GO:0005344 ... O76242 15161908
    57 1v8x:A (1.85) BS03 OXY 1.14.14.18 GO:0004392 ... P71119 14966119
    58 1v8x:B (1.85) BS02 OXY 1.14.14.18 GO:0004392 ... P71119 14966119
    59 1w6l:A (2.0) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    60 1wql:A (2.2) BS03 OXY 1.14.12.- GO:0005506 ... Q51743 15774891
    61 1xbn:A (2.5) BS01 OXY ? GO:0020037 ... Q8RBX6 15472039
    62 1y8w:A (2.9) BS02 OXY ? GO:0004601 ... P69905 15835899
    63 1y8w:B (2.9) BS02 OXY ? GO:0004601 ... P68871 15835899
    64 1ycf:A (3.0) BS03 OXY 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    65 1ycf:B (3.0) BS03 OXY 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    66 1ycf:C (3.0) BS02 OXY 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    67 1ycf:D (3.0) BS03 OXY 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    68 1ydz:B (3.3) BS02 OXY ? GO:0004601 ... P68871 15835899
    69 1ydz:D (3.3) BS02 OXY ? GO:0004601 ... P68871 15835899
    70 1ye0:B (2.5) BS02 OXY ? GO:0004601 ... P68871 15835899
    71 1ye0:C (2.5) BS02 OXY ? GO:0004601 ... P69905 15835899
    72 1ye0:D (2.5) BS02 OXY ? GO:0004601 ... P68871 15835899
    73 1ye2:B (1.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    74 1ye2:C (1.8) BS02 OXY ? GO:0004601 ... P69905 15835899
    75 1ye2:D (1.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    76 1yen:B (2.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    77 1yen:D (2.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    78 1yeo:B (2.22) BS02 OXY ? GO:0004601 ... P68871 15835899
    79 1yeo:C (2.22) BS02 OXY ? GO:0004601 ... P69905 15835899
    80 1yeo:D (2.22) BS02 OXY ? GO:0004601 ... P68871 15835899
    81 1yeq:B (2.75) BS02 OXY ? GO:0004601 ... P68871 15835899
    82 1yeq:C (2.75) BS02 OXY ? GO:0004601 ... P69905 15835899
    83 1yeu:B (2.12) BS02 OXY ? GO:0004601 ... P68871 15835899
    84 1yeu:D (2.12) BS02 OXY ? GO:0004601 ... P68871 15835899
    85 1yev:B (2.11) BS02 OXY ? GO:0004601 ... P68871 15835899
    86 1yev:C (2.11) BS02 OXY ? GO:0004601 ... P69905 15835899
    87 1yev:D (2.11) BS02 OXY ? GO:0004601 ... P68871 15835899
    88 1yfw:A (2.0) BS03 OXY 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    89 1yg5:B (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    90 1yg5:C (2.7) BS02 OXY ? GO:0004601 ... P69905 15835899
    91 1yg5:D (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    92 1ygd:B (2.73) BS02 OXY ? GO:0004601 ... P68871 15835899
    93 1ygd:D (2.73) BS02 OXY ? GO:0004601 ... P68871 15835899
    94 1ygf:A (2.7) BS02 OXY ? GO:0004601 ... P69905 15835899
    95 1ygf:B (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    96 1ygf:D (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    97 1yh9:B (2.2) BS02 OXY ? GO:0004601 ... P68871 15835899
    98 1yh9:C (2.2) BS02 OXY ? GO:0004601 ... P69905 15835899
    99 1yh9:D (2.2) BS02 OXY ? GO:0004601 ... P68871 15835899
    100 1yhe:B (2.1) BS02 OXY ? GO:0004601 ... P68871 15835899
    101 1yhe:D (2.1) BS02 OXY ? GO:0004601 ... P68871 15835899
    102 1yhr:B (2.6) BS01 OXY ? GO:0004601 ... P68871 15835899
    103 1yhr:D (2.6) BS01 OXY ? GO:0004601 ... P68871 15835899
    104 1yhu:A (3.15) BS02 OXY ? GO:0005344 ... Q8IFK4 15710902
    105 1yhu:B (3.15) BS04 OXY ? GO:0001666 ... P80592 15710902
    106 1yhu:C (3.15) BS02 OXY ? GO:0001666 ... Q8IFK2 15710902
    107 1yhu:E (3.15) BS02 OXY ? GO:0005344 ... Q8IFK4 15710902
    108 1yhu:F (3.15) BS04 OXY ? GO:0001666 ... P80592 15710902
    109 1yhu:G (3.15) BS02 OXY ? GO:0001666 ... Q8IFK2 15710902
    110 1yhu:J (3.15) BS04 OXY ? GO:0001666 ... P80592 15710902
    111 1yhu:K (3.15) BS02 OXY ? GO:0001666 ... Q8IFK2 15710902
    112 1yhu:M (3.15) BS02 OXY ? GO:0005344 ... Q8IFK4 15710902
    113 1yhu:N (3.15) BS04 OXY ? GO:0001666 ... P80592 15710902
    114 1yhu:O (3.15) BS02 OXY ? GO:0001666 ... Q8IFK2 15710902
    115 1yhu:Q (3.15) BS02 OXY ? GO:0005344 ... Q8IFK4 15710902
    116 1yhu:R (3.15) BS04 OXY ? GO:0001666 ... P80592 15710902
    117 1yhu:S (3.15) BS02 OXY ? GO:0001666 ... Q8IFK2 15710902
    118 1yhu:U (3.15) BS02 OXY ? GO:0005344 ... Q8IFK4 15710902
    119 1yhu:V (3.15) BS04 OXY ? GO:0001666 ... P80592 15710902
    120 1yhu:W (3.15) BS02 OXY ? GO:0001666 ... Q8IFK2 15710902
    121 1yie:B (2.4) BS02 OXY ? GO:0004601 ... P68871 15835899
    122 1yie:C (2.4) BS02 OXY ? GO:0004601 ... P69905 15835899
    123 1yie:D (2.4) BS02 OXY ? GO:0004601 ... P68871 15835899
    124 1yih:B (2.0) BS02 OXY ? GO:0004601 ... P68871 15835899
    125 1yih:D (2.0) BS02 OXY ? GO:0004601 ... P68871 15835899
    126 1yoi:A (1.65) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8810310
    127 2a1m:A (2.1) BS02 OXY 1.14.15.1 GO:0004497 ... P00183 15994329
    128 2a1m:B (2.1) BS02 OXY 1.14.15.1 GO:0004497 ... P00183 15994329
    129 2bkm:A (1.5) BS01 OXY ? GO:0005344 ... Q5L1S0 17126283
    130 2bkm:B (1.5) BS01 OXY ? GO:0005344 ... Q5L1S0 17126283
    131 2c0k:A (2.6) BS02 OXY ? GO:0001666 ... O96457 16260762
    132 2c0k:B (2.6) BS02 OXY ? GO:0001666 ... O96457 16260762
    133 2d2m:B (2.85) BS02 OXY ? GO:0005344 ... Q7M413 16204001
    134 2d2m:C (2.85) BS02 OXY ? GO:0001666 ... Q7M418 16204001
    135 2d2n:B (3.2) BS02 OXY ? GO:0005344 ... Q7M413 16204001
    136 2d2n:C (3.2) BS02 OXY ? GO:0001666 ... Q7M418 16204001
    137 2dn1:B (1.25) BS02 OXY ? GO:0004601 ... P68871 16765986
    138 2gbw:A (1.7) BS03 OXY ? GO:0005506 ... A2TC87 17349044
    139 2gbw:C (1.7) BS03 OXY ? GO:0005506 ... A2TC87 17349044
    140 2gbw:E (1.7) BS01 OXY ? GO:0005506 ... A2TC87 17349044
    141 2gdm:A (1.7) BS02 OXY ? GO:0005344 ... P02240 7643380
    142 2gew:A (0.97) BS02 OXY 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P12676 16604066
    143 2iga:C (1.95) BS03 OXY 1.13.11.15 GO:0046872 ... Q45135 17446402
    144 2ih8:A (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    145 2ih8:B (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 17045575
    146 2isl:E (2.9) BS02 OXY 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    147 2isl:F (2.9) BS03 OXY 1.13.11.79 GO:0000166 ... Q92PC8 17377583
    148 2j5w:A (2.8) BS10 OXY 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4    		 GO:0005507 ... P00450 17242517
    149 2mgm:A (1.9) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8230194
    150 2np9:A (2.45) BS02 OXY 1.13.11.80 GO:0006635 ... Q8KLK7 17507985
    151 2np9:B (2.45) BS02 OXY 1.13.11.80 GO:0006635 ... Q8KLK7 17507985
    152 2olp:A (1.932) BS02 OXY ? GO:0019825 ... P41261 18203714
    153 2olp:B (1.932) BS02 OXY ? GO:0019825 ... P41261 18203714
    154 2p5b:A (1.99) BS05 OXY 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    155 2p5b:A (1.99) BS06 OXY 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    156 2p5b:B (1.99) BS06 OXY 1.14.11.66
    1.14.11.69    		 N/A O75164 17567753
    157 2pg8:A (3.0) BS02 OXY 1.13.11.80 GO:0006635 ... Q8KLK7 18004875
    158 2q9o:A (1.3) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    159 2q9o:B (1.3) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 18249560
    160 2qfn:A (1.62) BS02 OXY ? GO:0004601 ... Q9NAV8 17881827
    161 2qfn:B (1.62) BS02 OXY ? GO:0004601 ... Q9NAV8 17881827
    162 2qmb:A (2.8) BS02 OXY ? GO:0004601 ... P81023 N/A
    163 2qmb:B (2.8) BS02 OXY ? GO:0005833 ... G1U9Q8 N/A
    164 2qmb:D (2.8) BS02 OXY ? GO:0005833 ... G1U9Q8 N/A
    165 2r80:A (1.44) BS02 OXY ? GO:0004601 ... P21871 N/A
    166 2r80:B (1.44) BS02 OXY ? GO:0004601 ... P11342 N/A
    167 2r80:C (1.44) BS02 OXY ? GO:0004601 ... P21871 N/A
    168 2r80:D (1.44) BS02 OXY ? GO:0004601 ... P11342 N/A
    169 2rao:D (2.0) BS01 OXY ? GO:0004601 ... P02057 N/A
    170 2spn:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 1629229
    171 2vly:A (1.6) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 18215120
    172 2vyw:A (1.8) BS02 OXY N/A GO:0019825 ... N/A 18621914
    173 2vyy:A (1.6) BS02 OXY ? GO:0005344 ... O76242 18840607
    174 2vyz:A (1.8) BS02 OXY ? GO:0005344 ... O76242 18840607
    175 2vzw:B (2.3) BS02 OXY 2.7.13.3 N/A P9WGK1 18980385
    176 2wsd:A (1.6) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 18307408
    177 2wth:A (2.8) BS02 OXY ? GO:0005344 ... P30627 20361867
    178 2x88:A (1.8) BS05 OXY 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 20822511
    179 2xih:A (1.65) BS02 OXY 1.11.1.11 GO:0004601 ... Q43758 21062738
    180 2xkg:A (1.6) BS02 OXY ? GO:0005344 ... O76242 21147768
    181 2xkh:A (2.31) BS02 OXY ? GO:0005344 ... O76242 21147768
    182 2y69:A (1.95) BS04 OXY 7.1.1.9 GO:0004129 ... P00396 21211513
    183 2y69:N (1.95) BS04 OXY 7.1.1.9 GO:0004129 ... P00396 21211513
    184 2yae:A (1.8) BS05 OXY 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    185 2z6s:A (1.25) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17929929
    186 2zfo:A (1.95) BS02 OXY ? GO:0001666 ... Q7M419 18398907
    187 2zka:A (1.61) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 18375516
    188 2zkb:A (1.61) BS02 OXY 1.7.3.3 GO:0004846 ... Q00511 18375516
    189 2zs0:A (1.6) BS02 OXY ? GO:0001666 ... Q7M419 18834142
    190 2zs0:B (1.6) BS02 OXY ? GO:0005344 ... Q7M413 18834142
    191 2zs0:C (1.6) BS03 OXY ? GO:0001666 ... Q7M418 18834142
    192 2zs0:D (1.6) BS02 OXY ? GO:0005344 ... Q5KSB7 18834142
    193 2zs1:A (1.7) BS02 OXY ? GO:0001666 ... Q7M419 18834142
    194 2zs1:B (1.7) BS02 OXY ? GO:0005344 ... Q7M413 18834142
    195 2zs1:C (1.7) BS02 OXY ? GO:0001666 ... Q7M418 18834142
    196 2zs1:D (1.7) BS02 OXY ? GO:0005344 ... Q5KSB7 18834142
    197 3a0g:A (2.5) BS02 OXY ? GO:0004601 ... P01947 N/A
    198 3a0g:B (2.5) BS02 OXY ? GO:0004601 ... P02095 N/A
    199 3abg:A (2.3) BS05 OXY 1.3.3.5 GO:0005507 ... Q12737 20606269
    200 3abg:B (2.3) BS05 OXY 1.3.3.5 GO:0005507 ... Q12737 20606269
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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