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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ikt:A (1.75) BS01 OXN 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 11700068 PDBbind: -logKd/Ki=3.40, Kd=400uM
    2 1ueh:B (1.73) BS03 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    3 1ueh:B (1.73) BS04 OXN 2.5.1.31 GO:0000287 ... P60472 12756244
    4 2d4q:A (2.3) BS01 OXN ? N/A P21359 16397625
    5 2d4q:B (2.3) BS01 OXN ? N/A P21359 16397625
    6 2q32:A (2.4) BS01 OXN 1.14.14.18 GO:0004392 ... P30519 17965015
    7 2q32:B (2.4) BS01 OXN 1.14.14.18 GO:0004392 ... P30519 17965015
    8 4tpl:A (2.9) BS01 OXN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q5SBG8 25286855
    9 6z1w:A (2.48) BS01 OXN 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 N/A
    10 6z1x:A (2.09) BS01 OXN 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 N/A
    11 7vud:A (2.8) BS01 OXN 1.14.99.n4 GO:0009570 ... D4QE74 N/A
    12 7vud:A (2.8) BS02 OXN 1.14.99.n4 GO:0009570 ... D4QE74 N/A
    13 7vud:A (2.8) BS03 OXN 1.14.99.n4 GO:0009570 ... D4QE74 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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