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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 188l:A (1.8) BS01 OXE 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=469uM
    PDBbind: -logKd/Ki=3.33, Kd=470uM
    2 3e0x:A (1.45) BS01 OXE ? N/A Q97KV0 N/A
    3 3e0x:B (1.45) BS01 OXE ? N/A Q97KV0 N/A
    4 5nf0:C (1.271) BS05 OXE ? GO:0030246 ... Q9HYN5 29163899
    5 7l3c:A (1.31) BS01 OXE 3.2.1.17 GO:0003796 ... P00720 34667539
    6 7nbg:DDD (1.53) BS03 OXE 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    7 7zkr:A (1.1) BS02 OXE ? GO:0000045 ... O95166 35917476
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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