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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1o4n:A (1.6) BS01 OXD 2.7.10.2 N/A P12931 14613321 MOAD: ic50>40mM
    PDBbind: -logKd/Ki=1.40, IC50>40mM
    2 1t4c:A (2.61) BS02 OXD 2.8.3.16 GO:0003824 ... O06644 15213226
    3 1t4c:B (2.61) BS02 OXD 2.8.3.16 GO:0003824 ... O06644 15213226
    4 1ytm:A (2.2) BS03 OXD 4.1.1.49 GO:0004611 ... O09460 15890557
    5 1ytm:B (2.2) BS03 OXD 4.1.1.49 GO:0004611 ... O09460 15890557
    6 4inf:A (1.48) BS02 OXD ? GO:0005737 ... Q2GA79 N/A
    7 4inf:B (1.48) BS02 OXD ? GO:0005737 ... Q2GA79 N/A
    8 4inf:C (1.48) BS02 OXD ? GO:0005737 ... Q2GA79 N/A
    9 4inf:D (1.48) BS02 OXD ? GO:0005737 ... Q2GA79 N/A
    10 4uzi:A (2.1) BS05 OXD 1.11.1.19
    1.11.1.7    		 GO:0004601 ... I2DBY1 25542606
    11 4wj8:A (2.87) BS01 OXD 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    12 4wj8:B (2.87) BS01 OXD 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    13 4wj8:C (2.87) BS02 OXD 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    14 4wj8:D (2.87) BS01 OXD 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 N/A
    15 4ywb:A (1.5) BS03 OXD 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26322521
    16 4ywb:C (1.5) BS03 OXD 2.7.11.-
    4.1.1.32    		 GO:0000287 ... P07379 26322521
    17 4z0p:A (1.7) BS01 OXD 1.1.1.79 GO:0000166 ... Q92T34 29309127
    18 4z0p:A (1.7) BS02 OXD 1.1.1.79 GO:0000166 ... Q92T34 29309127
    19 5ie3:A (1.9) BS02 OXD 6.2.1.8 GO:0005524 ... Q9SMT7 27326693 MOAD: Kd=18.2uM
    20 5ie3:B (1.9) BS02 OXD 6.2.1.8 GO:0005524 ... Q9SMT7 27326693 MOAD: Kd=18.2uM
    21 5tsd:A (1.9) BS02 OXD ? GO:0000166 ... Q2KDT2 N/A
    22 5tsd:B (1.9) BS02 OXD ? GO:0000166 ... Q2KDT2 N/A
    23 5v0t:A (1.95) BS03 OXD 2.4.1.15 GO:0000166 ... Q13W28 N/A
    24 5v0t:B (1.95) BS03 OXD 2.4.1.15 GO:0000166 ... Q13W28 N/A
    25 5v0t:E (1.95) BS03 OXD 2.4.1.15 GO:0000166 ... Q13W28 N/A
    26 5v0t:F (1.95) BS03 OXD 2.4.1.15 GO:0000166 ... Q13W28 N/A
    27 6ipd:A (1.7) BS06 OXD 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    28 6tv0:A (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    29 6tv0:B (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    30 6tv0:C (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    31 6tv0:D (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    32 6tv0:E (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    33 6tv0:F (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    34 6tv0:G (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    35 6tv0:H (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    36 6tv0:I (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    37 6tv0:J (1.96) BS01 OXD N/A GO:0003677 ... N/A 32880586
    38 6vb9:A (1.881) BS02 OXD 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    39 6vb9:B (1.881) BS01 OXD 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    40 6vb9:C (1.881) BS02 OXD 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    41 6vb9:D (1.881) BS02 OXD 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    42 7qdn:A (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    43 7qdn:B (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    44 7qdn:C (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    45 7qdn:D (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    46 7qdn:E (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    47 7qdn:F (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    48 7qdn:G (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    49 7qdn:H (1.695) BS02 OXD 2.7.1.40 GO:0000287 ... P30613 35290845
    50 7wh0:A (1.8) BS02 OXD ? GO:0003834 ... Q9U2E4 35223999
    51 7wh0:B (1.8) BS02 OXD ? GO:0003834 ... Q9U2E4 35223999
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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