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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2e9e:B (3.25) BS04 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    2 2eha:B (3.3) BS04 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    3 2nqx:A (2.95) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    4 2z5z:A (3.5) BS03 OSM 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    5 3bxi:A (2.3) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 19167310
    6 3nak:A (3.3) BS03 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    7 3nak:B (3.3) BS03 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    8 5b72:A (1.98) BS01 OSM 1.11.1.7 GO:0004601 ... P80025 27986533
    9 5gls:A (1.93) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 27986533
    10 5gls:A (1.93) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 27986533
    11 5wv3:A (2.07) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    12 5wv3:A (2.07) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    13 5wv3:A (2.07) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    14 5wv3:A (2.07) BS06 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    15 5wv3:A (2.07) BS07 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    16 5wv3:A (2.07) BS08 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    17 5wv3:A (2.07) BS09 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    18 5wv3:A (2.07) BS10 OSM 1.11.1.7 GO:0004601 ... P80025 29174286
    19 5zgs:A (2.2) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    20 6a4y:A (1.92) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    21 6ky7:A (2.27) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    22 6ky7:A (2.27) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    23 6ky7:A (2.27) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    24 6ky7:A (2.27) BS06 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    25 6l2j:A (1.933) BS02 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    26 6l2j:A (1.933) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    27 6l2j:A (1.933) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    28 6l2j:A (1.933) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    29 6l2j:A (1.933) BS06 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    30 6l9t:A (1.89) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    31 6lco:A (1.995) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    32 6lco:A (1.995) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    33 6lf7:A (1.794) BS03 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    34 6lf7:A (1.794) BS04 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    35 6lf7:A (1.794) BS05 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    36 6lf7:A (1.794) BS06 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    37 6lf7:A (1.794) BS07 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    38 6lf7:A (1.794) BS08 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    39 6m7e:A (2.42) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    40 7dlq:A (1.773) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    41 7dlq:A (1.773) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    42 7dlq:A (1.773) BS06 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    43 7dn6:A (1.696) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    44 7dn6:A (1.696) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    45 7dn6:A (1.696) BS06 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    46 7dn7:A (1.7) BS04 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    47 7dn7:A (1.7) BS05 OSM 1.11.1.7 GO:0004601 ... P80025 33882424
    48 8ing:A (1.98) BS04 OSM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    49 9it8:A (1.954) BS05 OSM N/A N/A P80025 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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