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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ecc:A (2.4) BS01 ONL 2.4.2.14 GO:0000287 ... P0AG16 9333323
    2 1ecc:B (2.4) BS02 ONL 2.4.2.14 GO:0000287 ... P0AG16 9333323
    3 1ecg:A (2.3) BS01 ONL 2.4.2.14 GO:0000287 ... P0AG16 8663035
    4 1ecg:B (2.3) BS01 ONL 2.4.2.14 GO:0000287 ... P0AG16 8663035
    5 1ofe:A (2.45) BS04 ONL 1.4.7.1 GO:0006537 ... P55038 12818206
    6 1ofe:B (2.45) BS04 ONL 1.4.7.1 GO:0006537 ... P55038 12818206
    7 2j6h:A (2.35) BS01 ONL 2.6.1.16 GO:0004360 ... P17169 16339762
    8 2j6h:B (2.35) BS01 ONL 2.6.1.16 GO:0004360 ... P17169 16339762
    9 3brm:A (2.29) BS01 ONL 3.5.1.2 GO:0004359 ... O31465 18459799
    10 3brm:B (2.29) BS01 ONL 3.5.1.2 GO:0004359 ... O31465 18459799
    11 3dla:A (2.35) BS02 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    12 3dla:B (2.35) BS01 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    13 3dla:C (2.35) BS01 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    14 3dla:D (2.35) BS02 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    15 4o7d:A (2.3) BS01 ONL 3.5.1.2 GO:0004359 ... O94925 24451979 PDBbind: -logKd/Ki=3.00, IC50~1mM
    16 4zdk:A (3.49) BS01 ONL 6.3.4.2 GO:0003883 ... P9WHK7 26097035
    17 4zdk:B (3.49) BS01 ONL 6.3.4.2 GO:0003883 ... P9WHK7 26097035
    18 6gq3:A (1.85) BS01 ONL 6.3.5.4 GO:0004066 ... P08243 31552298
    19 6gq3:B (1.85) BS01 ONL 6.3.5.4 GO:0004066 ... P08243 31552298
    20 8i9o:A (2.9) BS02 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    21 8i9o:B (2.9) BS04 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    22 8i9o:C (2.9) BS03 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    23 8i9o:D (2.9) BS05 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    24 8oxx:A (2.5) BS05 ONL 2.3.2.13 GO:0018149 ... Q08188 37798283
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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