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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fe3:A (2.8) BS01 OLA ? GO:0005504 ... O15540 10854433 PDBbind: -logKd/Ki=7.33, Kd=46.7nM
    2 1g74:A (1.7) BS01 OLA ? GO:0005324 ... P04117 14594993 MOAD: Kd=0.3uM
    PDBbind: -logKd/Ki=6.52, Kd=0.30uM
    3 1gni:A (2.4) BS01 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    4 1gni:A (2.4) BS02 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    5 1gni:A (2.4) BS03 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    6 1gni:A (2.4) BS04 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    7 1gni:A (2.4) BS05 OLA ? GO:0003677 ... P02768 11743713 MOAD: Kd=8.5nM
    PDBbind: -logKd/Ki=8.07, Kd=8.5nM
    8 1gt6:A (2.2) BS01 OLA 3.1.1.3 GO:0004806 ... O59952 11895431
    9 1gt6:B (2.2) BS01 OLA 3.1.1.3 GO:0004806 ... O59952 11895431
    10 1lfo:A (2.3) BS01 OLA ? GO:0003682 ... P02692 9054409 MOAD: Kd~2uM
    PDBbind: -logKd/Ki=6.70, Kd~0.2uM
    BindingDB: Ki=2900nM
    11 1lfo:A (2.3) BS02 OLA ? GO:0003682 ... P02692 9054409 MOAD: Kd~2uM
    PDBbind: -logKd/Ki=6.70, Kd~0.2uM
    BindingDB: Ki=2900nM
    12 1lid:A (1.6) BS01 OLA ? GO:0005324 ... P04117 8463311
    13 1pmp:A (2.7) BS01 OLA ? GO:0005504 ... P02690 7683727
    14 1pmp:B (2.7) BS01 OLA ? GO:0005504 ... P02690 7683727
    15 1pmp:C (2.7) BS01 OLA ? GO:0005504 ... P02690 7683727
    16 1vyf:A (1.85) BS01 OLA ? GO:0005504 ... P29498 15476393 MOAD: Kd=9nM
    PDBbind: -logKd/Ki=8.05, Kd=9nM
    17 2af9:A (2.0) BS01 OLA ? GO:0001573 ... P17900 16216074
    18 2ag2:B (2.0) BS03 OLA ? GO:0001573 ... P17900 16216074
    19 2ag2:C (2.0) BS03 OLA ? GO:0001573 ... P17900 16216074
    20 2ev1:A (1.6) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    21 2ev1:A (1.6) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    22 2ev1:B (1.6) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    23 2ev1:B (1.6) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    24 2ev2:A (2.35) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    25 2ev2:A (2.35) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    26 2ev2:B (2.35) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    27 2ev2:B (2.35) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    28 2ev3:A (2.68) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    29 2ev3:A (2.68) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    30 2ev3:B (2.68) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    31 2ev3:B (2.68) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    32 2ev4:A (2.28) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    33 2ev4:A (2.28) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    34 2ev4:B (2.28) BS01 OLA 4.6.1.1 N/A P9WMU9 17482646
    35 2ev4:B (2.28) BS02 OLA 4.6.1.1 N/A P9WMU9 17482646
    36 2lkk:A (-1.00) BS01 OLA ? GO:0003682 ... P07148 22713574 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    BindingDB: Kd=900nM
    37 2lkk:A (-1.00) BS02 OLA ? GO:0003682 ... P07148 22713574 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    BindingDB: Kd=900nM
    38 4dq3:A (2.1) BS01 OLA ? GO:0005515 ... P02754 23500663
    39 5ce4:A (0.98) BS01 OLA ? GO:0005515 ... P05413 27006775
    40 6o1t:A (2.3) BS02 OLA ? GO:0001530 ... P79125 30978191
    41 6o1t:B (2.3) BS02 OLA ? GO:0001530 ... P79125 30978191
    42 8ww2:R (2.79) BS01 OLA ? GO:0004930 ... P46089 38287117
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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