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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jk7:A (1.9) BS03 OKA 3.1.3.16 GO:0000070 ... P36873 11535607 PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=>5000nM
    2 1u32:A (2.0) BS03 OKA 3.1.3.16 GO:0000070 ... P36873 15280359 MOAD: ic50=97nM
    PDBbind: -logKd/Ki=7.01, IC50=97nM
    BindingDB: IC50=>5000nM
    3 2ie4:C (2.6) BS03 OKA 3.1.3.16 GO:0000159 ... P67775 17055435 PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=7nM
    4 4wri:A (1.4) BS01 OKA ? N/A Q2MHR1 25965326 PDBbind: -logKd/Ki=9.01, Kd=0.97nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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