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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5qsj:A (1.49) BS01 O1M ? GO:0000978 ... O15178 N/A
    2 5rk6:A (1.241) BS01 O1M ? N/A Q8WWQ0 N/A
    3 5ry6:A (1.74) BS01 O1M 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    4 5ry6:A (1.74) BS02 O1M 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    5 5rzd:A (1.81) BS01 O1M ? GO:0005856 ... Q9Y2J2 N/A
    6 5s5t:B (2.53) BS02 O1M ? GO:0000226 ... Q6B856 33951246
    7 5s5t:C (2.53) BS01 O1M 3.6.5.- GO:0000226 ... P81947 33951246
    8 5snh:A (1.95) BS01 O1M 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    9 5snh:A (1.95) BS02 O1M 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    10 5snh:A (1.95) BS03 O1M 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    11 5snh:B (1.95) BS01 O1M 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    12 5snh:B (1.95) BS02 O1M 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    13 8plx:A (1.77) BS02 O1M 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    14 8plx:B (1.77) BS02 O1M 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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