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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5u5u:A (1.33) BS02 NTN 1.11.1.-
    1.11.1.5    		 GO:0004601 ... B3LRE1 28760952 MOAD: Kd=619uM
    2 6zn0:A (1.59) BS01 NTN 2.7.11.11 GO:0000287 ... P25321 33021032
    3 6zn0:A (1.59) BS02 NTN 2.7.11.11 GO:0000287 ... P25321 33021032
    4 7adh:A (3.2) BS03 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    5 7adh:A (3.2) BS04 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    6 7adh:A (3.2) BS05 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    7 7adh:A (3.2) BS06 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    8 7adh:A (3.2) BS07 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    9 7adh:A (3.2) BS08 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    10 7adh:A (3.2) BS09 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    11 7adh:A (3.2) BS10 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    12 7adh:A (3.2) BS11 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    13 7adh:A (3.2) BS12 NTN 1.1.1.1 GO:0004022 ... P00327 6343388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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