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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1qap:A (2.8) BS01 NTM 2.4.2.19 GO:0004514 ... P30012 9016724
    2 1qap:B (2.8) BS01 NTM 2.4.2.19 GO:0004514 ... P30012 9016724
    3 1qpq:A (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    4 1qpq:B (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    5 1qpq:C (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    6 1qpq:D (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    7 1qpq:E (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    8 1qpq:F (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    9 2b7n:A (2.3) BS01 NTM 2.4.2.19 GO:0004514 ... O25909 16419067
    10 2b7n:B (2.3) BS01 NTM 2.4.2.19 GO:0004514 ... O25909 16419067
    11 2b7n:C (2.3) BS01 NTM 2.4.2.19 GO:0004514 ... O25909 16419067
    12 3c2o:A (2.3) BS01 NTM 2.4.2.19 GO:0004514 ... P43619 18321072 MOAD: Kd=0.45mM
    PDBbind: -logKd/Ki=3.35, Kd=0.45mM
    13 4ywd:A (2.1) BS03 NTM 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 26322521
    14 4zk6:A (1.895) BS02 NTM 2.5.1.72 GO:0005737 ... O57767 27224840
    15 4zk6:B (1.895) BS02 NTM 2.5.1.72 GO:0005737 ... O57767 27224840
    16 5ayy:A (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589 PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    17 5ayy:B (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589
    18 5ayy:C (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589
    19 5ayy:D (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589
    20 5ayy:E (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589
    21 5ayy:F (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589
    22 5ayy:G (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589 PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    23 5ayy:H (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589
    24 5ayy:I (3.09) BS01 NTM 2.4.2.19 GO:0004514 ... Q15274 26805589 PDBbind: -logKd/Ki=5.32, Kd=4.8uM
    25 5kto:A (1.442) BS02 NTM 2.5.1.72 GO:0005737 ... O57767 27404889
    26 5lqs:A (1.9) BS02 NTM 2.5.1.72 GO:0005737 ... Q9X1X7 27545412
    27 6f4l:A (2.3) BS02 NTM 2.5.1.72 GO:0005737 ... Q9X1X7 29641168
    28 7xgm:A (2.85) BS01 NTM N/A GO:0004514 ... N/A 36517246
    29 7xgm:B (2.85) BS01 NTM N/A GO:0004514 ... N/A 36517246

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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