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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2nsr:A (1.9) BS02 NSM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 N/A
    2 4m4a:A (2.05) BS02 NSM ? GO:0004601 ... P69905 24149619
    3 4m4a:B (2.05) BS02 NSM ? GO:0004601 ... P68871 24149619
    4 6e02:A (1.76) BS02 NSM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 37011611
    5 6e02:A (1.76) BS03 NSM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 37011611
    6 8f9h:A (1.75) BS02 NSM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 37011611
    7 8fdm:B (1.91) BS02 NSM ? GO:0004601 ... P68871 37406385
    8 8fdm:D (1.91) BS02 NSM ? GO:0004601 ... P68871 37406385
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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