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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2vc9:A (2.36) BS01 NOK 3.2.1.50 N/A A0A0H2YU91 18443291 MOAD: Kd=3.6nM
    PDBbind: -logKd/Ki=8.44, Kd=3.6nM
    2 3suv:A (1.6) BS01 NOK 3.2.1.52 GO:0004553 ... D2KW09 22367352 PDBbind: -logKd/Ki=4.55, Ki=28uM
    3 5bxr:A (1.6) BS02 NOK 3.2.1.140 GO:0004553 ... B3TLD6 26312778
    4 5bxr:B (1.6) BS02 NOK 3.2.1.140 GO:0004553 ... B3TLD6 26312778
    5 5g5k:A (3.1) BS01 NOK 3.2.1.52 GO:0004553 ... Q9HZK0 28482153 BindingDB: Ki=300nM
    6 5g5k:B (3.1) BS01 NOK 3.2.1.52 GO:0004553 ... Q9HZK0 28482153 BindingDB: Ki=300nM
    7 5ly7:A (3.1) BS01 NOK 3.2.1.52 GO:0004553 ... Q9HZK0 28482153 BindingDB: Ki=300nM
    8 5ly7:B (3.1) BS01 NOK 3.2.1.52 GO:0004553 ... Q9HZK0 28482153 BindingDB: Ki=300nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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