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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gzu:A (2.9) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11959140
    2 1gzu:B (2.9) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11959140
    3 1gzu:C (2.9) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11959140
    4 1hyb:A (2.0) BS02 NMN 2.7.7.1 GO:0000309 ... O26253 11063748
    5 1isj:A (2.3) BS01 NMN 3.2.2.6 GO:0001931 ... Q10588 11866528
    6 1isj:B (2.3) BS01 NMN 3.2.2.6 GO:0001931 ... Q10588 11866528
    7 1nup:A (1.9) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q96T66 12574164
    8 1nup:B (1.9) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q96T66 12574164
    9 1nus:A (2.2) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q96T66 12574164
    10 1nus:B (2.2) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q96T66 12574164
    11 1ta8:A (1.8) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 15296738
    12 1y1p:A (1.6) BS01 NMN 1.1.1.2 GO:0008106 ... Q9UUN9 16095619
    13 1y1p:B (1.6) BS01 NMN 1.1.1.2 GO:0008106 ... Q9UUN9 16095619
    14 2g96:A (2.9) BS01 NMN 2.4.2.12 GO:0000166 ... Q80Z29 16901503 PDBbind: -logKd/Ki=4.28, Kd=52.8uM
    15 2g96:A (2.9) BS02 NMN 2.4.2.12 GO:0000166 ... Q80Z29 16901503 PDBbind: -logKd/Ki=4.28, Kd=52.8uM
    16 2g96:B (2.9) BS01 NMN 2.4.2.12 GO:0000166 ... Q80Z29 16901503 PDBbind: -logKd/Ki=4.28, Kd=52.8uM
    17 2g96:B (2.9) BS02 NMN 2.4.2.12 GO:0000166 ... Q80Z29 16901503 PDBbind: -logKd/Ki=4.28, Kd=52.8uM
    18 2gvg:A (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    19 2gvg:A (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    20 2gvg:B (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    21 2gvg:C (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    22 2gvg:C (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    23 2gvg:D (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    24 2gvg:D (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    25 2gvg:E (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    26 2gvg:E (2.2) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    27 2gvg:F (2.2) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 16783377
    28 2h3d:A (2.1) BS01 NMN 2.4.2.12 GO:0005125 ... Q99KQ4 16783373
    29 2h3d:A (2.1) BS02 NMN 2.4.2.12 GO:0005125 ... Q99KQ4 16783373
    30 2h3d:B (2.1) BS01 NMN 2.4.2.12 GO:0005125 ... Q99KQ4 16783373
    31 2h3d:B (2.1) BS02 NMN 2.4.2.12 GO:0005125 ... Q99KQ4 16783373
    32 2hct:A (1.95) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 16861223
    33 2hct:B (1.95) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 16861223
    34 2qg6:A (1.5) BS01 NMN 2.7.1.173
    2.7.1.22    		 GO:0005515 ... Q9NWW6 17698003
    35 2qsz:A (1.9) BS01 NMN 2.7.1.173
    2.7.1.22    		 GO:0005515 ... Q9NWW6 17914902
    36 3ba8:A (1.9) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    37 3ba9:A (1.9) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    38 3baa:A (1.9) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    39 3bab:A (2.5) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    40 3dhd:A (2.0) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    41 3dhd:A (2.0) BS03 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    42 3dhd:B (2.0) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    43 3dhd:B (2.0) BS03 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    44 3dhf:A (1.8) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    45 3dhf:A (1.8) BS04 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    46 3dhf:B (1.8) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    47 3dhf:B (1.8) BS04 NMN 2.4.2.12 GO:0005125 ... P43490 19666527
    48 3dzj:A (1.9) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 18940667
    49 3dzj:B (1.9) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 18940667
    50 3dzk:A (1.81) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 18940667
    51 3dzk:B (1.81) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 18940667
    52 3ocu:A (1.35) BS02 NMN 3.1.3.2 GO:0009279 ... P26093 20934434
    53 4eeq:A (2.1) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    54 4efb:A (2.2) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    55 4efe:A (2.0) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 N/A
    56 4glw:B (2.0) BS02 NMN 6.5.1.2 GO:0003911 ... C1CKI0 23006603
    57 4lh6:A (1.65) BS02 NMN 6.5.1.2 GO:0003911 ... Q837V6 24287382
    58 4lh7:A (1.9) BS02 NMN 6.5.1.2 GO:0003911 ... Q837V6 24287382
    59 4ogw:A (2.05) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 25250980
    60 5iw5:A (2.7) BS02 NMN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 27428510
    61 5iw5:B (2.7) BS02 NMN 3.6.1.-
    3.6.1.22    		 GO:0000210 ... P32664 27428510
    62 5udr:A (2.62) BS01 NMN 4.4.1.37 GO:0005524 ... F9UST4 28784764
    63 5udr:B (2.62) BS01 NMN 4.4.1.37 GO:0005524 ... F9UST4 28784764
    64 5udr:C (2.62) BS01 NMN 4.4.1.37 GO:0005524 ... F9UST4 28784764
    65 5udr:D (2.62) BS01 NMN 4.4.1.37 GO:0005524 ... F9UST4 28784764
    66 5udr:E (2.62) BS01 NMN 4.4.1.37 GO:0005524 ... F9UST4 28784764
    67 5udr:F (2.62) BS01 NMN 4.4.1.37 GO:0005524 ... F9UST4 28784764
    68 6gyf:A (2.7) BS01 NMN N/A GO:0000309 ... N/A 32331317
    69 6gyf:B (2.7) BS01 NMN N/A GO:0000309 ... N/A 32331317
    70 6kdu:A (2.2) BS02 NMN 6.5.1.2 GO:0003911 ... P9WNV1 34076591
    71 6kjm:A (2.2) BS01 NMN 6.5.1.2 GO:0003911 ... P9WNV1 33197566
    72 6krh:A (2.6) BS02 NMN 6.5.1.2 GO:0003911 ... P9WNV1 34076591
    73 6ksd:A (2.5) BS01 NMN 6.5.1.2 GO:0003911 ... P9WNV1 34076591
    74 6tac:A (1.6) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 N/A
    75 6tac:A (1.6) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 N/A
    76 6tac:B (1.6) BS01 NMN 2.4.2.12 GO:0005125 ... P43490 N/A
    77 6tac:B (1.6) BS02 NMN 2.4.2.12 GO:0005125 ... P43490 N/A
    78 7lcz:A (1.65) BS01 NMN 3.2.2.6 GO:0003953 ... Q6IDD9 33657413
    79 7lcz:B (1.65) BS01 NMN 3.2.2.6 GO:0003953 ... Q6IDD9 33657413
    80 7nal:A (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    81 7nal:B (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    82 7nal:C (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    83 7nal:D (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    84 7nal:E (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    85 7nal:F (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    86 7nal:G (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    87 7nal:H (3.0) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 35334231
    88 7xhl:A (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    89 7xhl:B (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    90 7xhl:E (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    91 7xhl:G (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    92 7yqq:A (2.22) BS01 NMN 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    93 7yqq:B (2.22) BS01 NMN 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    94 8gni:A (3.74) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 36550129
    95 8gnj:A (3.78) BS01 NMN 3.2.2.-
    3.2.2.6    		 GO:0003953 ... Q6SZW1 36550129
    96 8jyd:A (3.0) BS01 NMN N/A N/A Q837V6 N/A
    97 8qe8:3 (3.8) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 38759627
    98 8qe8:4 (3.8) BS01 NMN 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 38759627
    99 9fyb:A (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    100 9fyb:B (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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