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BioLiP
Download all results in tab-seperated text for 90 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d0v:A (1.9) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 10587435
    2 1fsl:A (2.3) BS02 NIO ? GO:0005344 ... P02238 15299933
    3 1fsl:B (2.3) BS02 NIO ? GO:0005344 ... P02238 15299933
    4 1icr:A (1.7) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    5 1icr:B (1.7) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    6 1icu:A (1.8) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    7 1icu:A (1.8) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    8 1icu:B (1.8) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    9 1icu:B (1.8) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    10 1icu:C (1.8) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    11 1icu:C (1.8) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    12 1icu:D (1.8) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    13 1icv:A (2.4) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    14 1icv:A (2.4) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    15 1icv:B (2.4) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    16 1icv:C (2.4) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    17 1icv:D (2.4) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 11491290
    18 1jha:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19 1jho:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    20 1jhq:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    21 1jhr:A (2.0) BS01 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22 1jhv:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    23 1jhy:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    24 1l4n:A (2.0) BS03 NIO 2.4.2.21 GO:0000166 ... Q05603 12119022
    25 1l5k:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 12119022
    26 1l5l:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 12119022
    27 1l5m:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 12119022
    28 1lh6:A (2.0) BS02 NIO ? GO:0005344 ... P02240 N/A
    29 2f7f:A (2.0) BS01 NIO 6.3.4.21 GO:0004516 ... Q830Y8 N/A
    30 2f7f:A (2.0) BS02 NIO 6.3.4.21 GO:0004516 ... Q830Y8 N/A
    31 2lh6:A (2.0) BS02 NIO ? GO:0005344 ... P02240 N/A
    32 2wt9:A (1.65) BS02 NIO N/A N/A N/A 19859929
    33 2wt9:B (1.65) BS02 NIO N/A N/A N/A 19859929
    34 2xrh:A (1.5) BS01 NIO ? N/A O25423 21365686
    35 3ci8:A (2.4) BS03 NIO 3.4.21.- GO:0005576 ... P24627 N/A
    36 3hrd:A (2.2) BS05 NIO 1.17.1.5 GO:0005506 ... Q0QLF2 19549881
    37 3hrd:B (2.2) BS02 NIO 1.17.1.5 GO:0016491 ... Q0QLF1 19549881
    38 3i45:A (1.36) BS01 NIO ? GO:0006865 ... Q2RWX8 N/A
    39 3o14:A (1.7) BS02 NIO ? GO:0046872 ... A1TY68 N/A
    40 3r2j:A (2.68) BS02 NIO 3.5.1.19 GO:0016787 ... A4HRG8 21819459
    41 3r2j:B (2.68) BS02 NIO 3.5.1.19 GO:0016787 ... A4HRG8 21819459
    42 3r2j:C (2.68) BS02 NIO 3.5.1.19 GO:0016787 ... A4HRG8 21819459
    43 3r2j:D (2.68) BS02 NIO 3.5.1.19 GO:0016787 ... A4HRG8 21819459
    44 3war:A (1.04) BS01 NIO 2.7.11.1 GO:0004672 ... P68400 24121351
    45 4kqi:A (1.4) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 24121107
    46 5y9m:A (2.006) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 29717996
    47 5y9m:X (2.006) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 29717996
    48 5yf9:B (1.89) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 29717996
    49 5yf9:X (1.89) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 29717996
    50 5ywm:X (1.939) BS01 NIO 2.7.11.1 GO:0000785 ... P19784 N/A
    51 6mbv:A (1.695) BS02 NIO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30839290
    52 6pt8:A (1.4) BS02 NIO ? GO:0008939 ... Q58993 36229494
    53 6pt8:B (1.4) BS01 NIO ? GO:0008939 ... Q58993 36229494
    54 6pu6:B (2.293) BS02 NIO ? GO:0008939 ... Q58993 36229494
    55 6ta0:A (1.58) BS03 NIO 2.4.2.12 GO:0005125 ... P43490 N/A
    56 6ta0:A (1.58) BS04 NIO 2.4.2.12 GO:0005125 ... P43490 N/A
    57 6ta0:B (1.58) BS03 NIO 2.4.2.12 GO:0005125 ... P43490 N/A
    58 6wt2:A (1.75) BS01 NIO ? GO:0000166 ... A0A0U1RIB4 35195438
    59 6wt2:B (1.75) BS02 NIO ? GO:0000166 ... A0A0U1RIB4 35195438
    60 6wt2:C (1.75) BS01 NIO ? GO:0000166 ... A0A0U1RIB4 35195438
    61 6wt2:C (1.75) BS03 NIO ? GO:0000166 ... A0A0U1RIB4 35195438
    62 6wt2:D (1.75) BS02 NIO ? GO:0000166 ... A0A0U1RIB4 35195438
    63 7b8h:A (1.34) BS04 NIO 2.7.11.1 GO:0004672 ... P68400 33571828
    64 7cv2:A (1.802) BS01 NIO ? GO:0036094 ... Q9KDJ7 33273654
    65 7t33:A (2.301) BS02 NIO 1.-.-.- GO:0005829 ... Q57431 35441146
    66 7t33:B (2.301) BS02 NIO 1.-.-.- GO:0005829 ... Q57431 35441146
    67 7xgn:A (2.6) BS01 NIO N/A GO:0004514 ... N/A 36517246
    68 7xgn:B (2.6) BS01 NIO N/A GO:0004514 ... N/A 36517246
    69 7z1q:A (1.683) BS01 NIO ? GO:0004864 ... A0A3Q7HTY9 35734246
    70 7z1q:A (1.683) BS02 NIO ? GO:0004864 ... A0A3Q7HTY9 35734246
    71 7z1s:A (1.65) BS01 NIO ? GO:0004864 ... A0A3Q7HTY9 35734246
    72 8c5e:A (1.65) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    73 8c5e:B (1.65) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    74 8ccv:A (2.2) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    75 8ccv:B (2.2) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    76 8cj0:A (1.99) BS02 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    77 8cj0:B (1.99) BS03 NIO 1.-.-.-
    1.5.1.34    		 GO:0003955 ... P38489 36983061
    78 8h2g:A (3.01) BS01 NIO ? GO:0001781 ... P0ABE7
    Q8TDS4    		 N/A
    79 8ija:A (2.69) BS01 NIO ? GO:0004930 ... Q8TDS4 38012147
    80 8iy9:R (3.37) BS01 NIO ? GO:0001781 ... P08173
    Q8TDS4    		 38431681
    81 8j6l:R (3.05) BS01 NIO ? GO:0001781 ... Q8TDS4 37952153
    82 8j6p:R (2.55) BS03 NIO ? GO:0004930 ... Q8TDS4 37993467
    83 8jii:A (3.17) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    84 8jil:A (3.5) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    85 8k5b:A (3.43) BS01 NIO ? GO:0001781 ... Q8TDS4 37932263
    86 8qes:A (2.48) BS02 NIO N/A N/A P38489 N/A
    87 8qes:B (2.48) BS02 NIO N/A N/A P38489 N/A
    88 8qes:C (2.48) BS02 NIO N/A N/A P38489 N/A
    89 8qes:C (2.48) BS04 NIO N/A N/A P38489 N/A
    90 9bul:A (2.1) BS02 NIO N/A GO:0003677 ... Q9X1T8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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