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BioLiP
Download all results in tab-seperated text for 417 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 8hfb:A (2.24) BS02 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    402 8hfb:B (2.24) BS01 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    403 8hfb:B (2.24) BS02 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    404 8q2e:C (1.68) BS02 NI 3.5.1.5 GO:0005737 ... P41020 37879152
    405 8q2e:C (1.68) BS03 NI 3.5.1.5 GO:0005737 ... P41020 37879152
    406 8snf:D (2.3) BS01 NI N/A GO:0046872 ... N/A 38408229
    407 8snf:D (2.3) BS02 NI N/A GO:0046872 ... N/A 38408229
    408 8snf:F (2.3) BS01 NI N/A GO:0046872 ... N/A 38408229
    409 8snf:F (2.3) BS02 NI N/A GO:0046872 ... N/A 38408229
    410 8sp2:G (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    411 8sp2:G (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    412 8sp2:H (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    413 8sp2:H (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    414 8sp2:I (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    415 8sp2:I (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    416 8sp2:J (2.2) BS01 NI N/A GO:0046872 ... N/A 38408229
    417 8sp2:J (2.2) BS02 NI N/A GO:0046872 ... N/A 38408229
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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