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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 417 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3lgh:D (2.37) BS01 NI ? GO:0000976 ... O25896 20863122
    202 3ny0:B (3.09) BS01 NI ? GO:0005515 ... Q09064 20681615
    203 3od2:A (2.6) BS01 NI ? GO:0000976 ... P0A6Z6 20704276
    204 3od2:A (2.6) BS02 NI ? GO:0000976 ... P0A6Z6 20704276
    205 3od2:B (2.6) BS02 NI ? GO:0000976 ... P0A6Z6 20704276
    206 3od2:B (2.6) BS03 NI ? GO:0000976 ... P0A6Z6 20704276
    207 3pht:A (2.04) BS01 NI ? GO:0000976 ... O25896 22451934
    208 3pht:B (2.04) BS01 NI ? GO:0000976 ... O25896 22451934
    209 3qsi:A (3.08) BS01 NI ? N/A O25896 22451934
    210 3qsi:B (3.08) BS01 NI ? N/A O25896 22451934
    211 3qsi:C (3.08) BS01 NI ? N/A O25896 22451934
    212 3qsi:D (3.08) BS01 NI ? N/A O25896 22451934
    213 3qsi:E (3.08) BS01 NI ? N/A O25896 22451934
    214 3qsi:F (3.08) BS01 NI ? N/A O25896 22451934
    215 3qsi:G (3.08) BS01 NI ? N/A O25896 22451934
    216 3qsi:H (3.08) BS01 NI ? N/A O25896 22451934
    217 3qsi:I (3.08) BS01 NI ? N/A O25896 22451934
    218 3set:A (1.9) BS03 NI ? GO:0005515 ... P0AEX9 21898649
    219 3set:C (1.9) BS03 NI ? GO:0005515 ... P0AEX9 21898649
    220 3sex:A (1.95) BS03 NI ? GO:0005515 ... P0AEX9 21898649
    221 3sex:C (1.95) BS03 NI ? GO:0005515 ... P0AEX9 21898649
    222 3skd:A (2.0) BS01 NI 3.1.-.-
    3.6.4.-    		 N/A Q53VY2 21775431
    223 3ubp:C (2.0) BS01 NI 3.5.1.5 GO:0005737 ... P41020 10368287
    224 3ubp:C (2.0) BS02 NI 3.5.1.5 GO:0005737 ... P41020 10368287
    225 4ac7:C (1.5) BS01 NI 3.5.1.5 GO:0005737 ... P41020 23412551
    226 4ac7:C (1.5) BS02 NI 3.5.1.5 GO:0005737 ... P41020 23412551
    227 4ceu:C (1.58) BS01 NI 3.5.1.5 GO:0005737 ... P41020 25113581
    228 4ceu:C (1.58) BS02 NI 3.5.1.5 GO:0005737 ... P41020 25113581
    229 4cex:C (1.589) BS01 NI 3.5.1.5 GO:0005737 ... P41020 25113581
    230 4cex:C (1.589) BS02 NI 3.5.1.5 GO:0005737 ... P41020 25113581
    231 4cot:A (1.9) BS01 NI 3.2.1.99 GO:0004553 ... P42293 24549757
    232 4i7h:A (2.0) BS01 NI ? GO:0000976 ... A0A0H2UT39 23645680
    233 4i7h:B (2.0) BS02 NI ? GO:0000976 ... A0A0H2UT39 23645680
    234 4kga:A (2.32) BS01 NI 3.4.21.- GO:0004252 ... Q9Y5K2 27767076
    235 4kga:A (2.32) BS02 NI 3.4.21.- GO:0004252 ... Q9Y5K2 27767076
    236 4kga:B (2.32) BS01 NI 3.4.21.- GO:0004252 ... Q9Y5K2 27767076
    237 4kga:B (2.32) BS02 NI 3.4.21.- GO:0004252 ... Q9Y5K2 27767076
    238 4lps:A (2.0) BS03 NI ? GO:0003924 ... O25560 24338018
    239 4lps:B (2.0) BS02 NI ? GO:0003924 ... O25560 24338018
    240 4m58:A (3.21) BS01 NI ? GO:0000041 ... Q8R9C0 24366337
    241 4m5b:A (1.833) BS01 NI ? GO:0000041 ... Q8R9C0 24366337
    242 4oeu:A (2.2) BS01 NI ? GO:0015833 ... Q0P844 25199691
    243 4oeu:B (2.2) BS01 NI ? GO:0015833 ... Q0P844 25199691
    244 4oev:A (1.9) BS01 NI ? GO:0015833 ... Q0P844 25199691
    245 4oev:B (1.9) BS01 NI ? GO:0015833 ... Q0P844 25199691
    246 4ofo:A (3.0) BS01 NI ? GO:0030288 ... A0A5P8YI66 25199691
    247 4ofo:B (3.0) BS01 NI ? GO:0030288 ... A0A5P8YI66 25199691
    248 4ofo:C (3.0) BS01 NI ? GO:0030288 ... A0A5P8YI66 25199691
    249 4ofo:D (3.0) BS01 NI ? GO:0030288 ... A0A5P8YI66 25199691
    250 4oi6:B (2.04) BS01 NI ? N/A Q9FCE4 25285530
    251 4oi6:B (2.04) BS02 NI ? N/A Q9FCE4 25285530
    252 4ud2:Q (2.3) BS02 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    253 4ud2:R (2.3) BS02 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    254 4ud2:S (2.3) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    255 4ud6:Q (2.12) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    256 4ud6:R (2.12) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    257 4ud6:S (2.12) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    258 4ue2:Q (2.02) BS04 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    259 4ue2:R (2.02) BS04 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    260 4ue2:S (2.02) BS03 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    261 4ue3:LLL (1.4) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    262 4ue3:MMM (1.4) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    263 4ue6:Q (2.3) BS02 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    264 4ue6:R (2.3) BS03 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    265 4ue6:S (2.3) BS02 NI 1.12.2.1 GO:0008901 ... P18188 25780984
    266 4ueq:Q (1.7) BS04 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    267 4ueq:R (1.7) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    268 4ueq:S (1.7) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    269 4ueq:T (1.7) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    270 4ueq:U (1.7) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    271 4ueq:V (1.7) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    272 4uew:Q (2.08) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    273 4uew:R (2.08) BS03 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    274 4uew:S (2.08) BS04 NI 1.12.2.1 GO:0008901 ... E1K247 25780984
    275 4wwb:A (1.11) BS01 NI ? GO:0042597 ... P37975 25628016
    276 4wwf:A (1.1) BS01 NI ? GO:0042597 ... P37975 25628016
    277 4wwf:B (1.1) BS01 NI ? GO:0042597 ... P37975 25628016
    278 5a4f:L (1.25) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    279 5a4f:M (1.25) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    280 5a4i:L (1.23) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    281 5a4i:M (1.23) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    282 5a6t:C (1.65) BS01 NI 3.5.1.5 GO:0005737 ... P41020 26580226
    283 5a6t:C (1.65) BS02 NI 3.5.1.5 GO:0005737 ... P41020 26580226
    284 5adu:L (1.1) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    285 5adu:M (1.1) BS02 NI 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    286 5d7z:A (1.73) BS01 NI 4.4.1.5 GO:0004462 ... B6TPH0 26457425
    287 5flh:A (1.802) BS01 NI ? N/A A2VA43 26846734
    288 5flh:B (1.802) BS01 NI ? N/A A2VA43 26846734
    289 5fli:A (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    290 5fli:B (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    291 5fli:C (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    292 5fli:D (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    293 5fli:E (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    294 5fli:F (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    295 5fli:G (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    296 5fli:H (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    297 5fli:I (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    298 5fli:J (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    299 5fli:K (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    300 5fli:L (2.15) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    301 5flj:A (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    302 5flj:B (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    303 5flj:C (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    304 5flj:D (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    305 5flj:E (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    306 5flj:F (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    307 5flj:G (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    308 5flj:H (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    309 5flj:I (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    310 5flj:J (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    311 5flj:K (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    312 5flj:L (1.818) BS01 NI 1.13.11.24 N/A A2VA43 26846734
    313 5ht8:A (2.01) BS01 NI ? N/A A6LX94 28029780
    314 5i8s:A (1.89) BS01 NI 1.13.11.53
    1.13.11.54    		 GO:0005506 ... Q99JT9 26858196
    315 5i8t:A (1.751) BS01 NI 1.13.11.53
    1.13.11.54    		 GO:0005506 ... Q99JT9 26858196
    316 5i91:A (1.76) BS01 NI 1.13.11.53
    1.13.11.54    		 GO:0005506 ... Q99JT9 26858196
    317 5i93:A (2.236) BS01 NI 1.13.11.53
    1.13.11.54    		 GO:0005506 ... Q99JT9 26858196
    318 5ol4:C (1.28) BS01 NI 3.5.1.5 GO:0005737 ... P41020 28857549
    319 5ol4:C (1.28) BS02 NI 3.5.1.5 GO:0005737 ... P41020 28857549
    320 5tfz:A (2.2) BS01 NI ? GO:0046872 ... Q4FNM4 28511016
    321 5tfz:B (2.2) BS01 NI ? GO:0046872 ... Q4FNM4 28511016
    322 5w1f:A (2.6) BS02 NI ? GO:0002523 ... P05109 28573847
    323 5w1f:B (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    324 5w1f:C (2.6) BS01 NI ? GO:0002523 ... P05109 28573847
    325 5w1f:C (2.6) BS03 NI ? GO:0002523 ... P05109 28573847
    326 5w1f:D (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    327 5w1f:D (2.6) BS02 NI ? GO:0002523 ... P06702 28573847
    328 5w1f:E (2.6) BS01 NI ? GO:0002523 ... P05109 28573847
    329 5w1f:E (2.6) BS03 NI ? GO:0002523 ... P05109 28573847
    330 5w1f:F (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    331 5w1f:F (2.6) BS02 NI ? GO:0002523 ... P06702 28573847
    332 5w1f:G (2.6) BS02 NI ? GO:0002523 ... P05109 28573847
    333 5w1f:H (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    334 5wk0:A (1.335) BS01 NI ? GO:0016740 ... A0A2C9TMM3 29417696
    335 5xkt:A (1.8) BS02 NI N/A GO:0003924 ... N/A 29203664
    336 5xkt:A (1.8) BS03 NI N/A GO:0003924 ... N/A 29203664
    337 5xkt:B (1.8) BS02 NI N/A GO:0003924 ... N/A 29203664
    338 5xkt:B (1.8) BS04 NI N/A GO:0003924 ... N/A 29203664
    339 6ds2:A (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    340 6ds2:B (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    341 6ds2:C (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    342 6ds2:C (2.1) BS02 NI ? GO:0002523 ... P05109 29890074
    343 6ds2:D (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    344 6ds2:D (2.1) BS02 NI ? GO:0002523 ... P06702 29890074
    345 6ds2:E (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    346 6ds2:E (2.1) BS02 NI ? GO:0002523 ... P05109 29890074
    347 6ds2:F (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    348 6ds2:F (2.1) BS02 NI ? GO:0002523 ... P06702 29890074
    349 6ds2:G (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    350 6ds2:H (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    351 6g48:C (1.91) BS01 NI 3.5.1.5 GO:0005737 ... P41020 29845996
    352 6g48:C (1.91) BS02 NI 3.5.1.5 GO:0005737 ... P41020 29845996
    353 6h6s:A (1.45) BS01 NI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30470900
    354 6h6s:B (1.45) BS01 NI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30470900
    355 6h8j:C (1.45) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30735374
    356 6h8j:C (1.45) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30735374
    357 6hk5:A (2.042) BS01 NI ? N/A P72321 30858174
    358 6hk5:B (2.042) BS01 NI ? N/A P72321 30858174
    359 6hk5:C (2.042) BS01 NI ? N/A P72321 30858174
    360 6hk5:D (2.042) BS01 NI ? N/A P72321 30858174
    361 6hk5:E (2.042) BS01 NI ? N/A P72321 30858174
    362 6hk5:F (2.042) BS01 NI ? N/A P72321 30858174
    363 6hk5:G (2.042) BS01 NI ? N/A P72321 30858174
    364 6hk5:H (2.042) BS01 NI ? N/A P72321 30858174
    365 6i9y:C (2.14) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30996797
    366 6i9y:C (2.14) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30996797
    367 6kh5:A (2.294) BS02 NI 1.16.3.1 GO:0004322 ... T2B7E1 31820500
    368 6m27:A (2.6) BS01 NI 4.99.1.11
    4.99.1.3    		 GO:0009236 ... Q58380 34163982
    369 6m27:B (2.6) BS01 NI 4.99.1.11
    4.99.1.3    		 GO:0009236 ... Q58380 34163982
    370 6m2h:A (3.1) BS01 NI 4.99.1.11
    4.99.1.3    		 GO:0009236 ... Q58380 34163982
    371 6m2h:B (3.1) BS01 NI 4.99.1.11
    4.99.1.3    		 GO:0009236 ... Q58380 34163982
    372 6qdy:C (1.416) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30969470
    373 6qdy:C (1.416) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30969470
    374 6rkg:C (1.32) BS01 NI 3.5.1.5 GO:0005737 ... P41020 31271481
    375 6rkg:C (1.32) BS02 NI 3.5.1.5 GO:0005737 ... P41020 31271481
    376 6rp1:C (1.49) BS01 NI 3.5.1.5 GO:0005737 ... P41020 31271481
    377 6rp1:C (1.49) BS02 NI 3.5.1.5 GO:0005737 ... P41020 31271481
    378 6uts:A (3.09) BS01 NI 1.13.11.24 GO:0008127 ... P46852 31609578
    379 6z7r:B (1.77) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    380 6z7r:D (1.77) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    381 6z8j:B (1.09) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    382 6z8j:D (1.09) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    383 6z8m:B (1.02) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    384 6z8o:B (2.2) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    385 6z8o:D (2.2) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    386 6z9g:B (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    387 6z9g:D (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    388 6z9g:F (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    389 6z9g:H (1.76) BS04 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    390 6z9o:B (1.53) BS03 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    391 6za1:B (1.37) BS03 NI 1.12.7.2 GO:0005515 ... Q72AS3 32865640
    392 7rei:A (1.78) BS01 NI 1.13.11.19 GO:0005506 ... Q96SZ5 34508780
    393 7u1v:A (2.1) BS01 NI 3.1.3.- GO:0004427 ... Q9UT55 35314193
    394 7u1v:B (2.1) BS01 NI 3.1.3.- GO:0004427 ... Q9UT55 35314193
    395 8dcb:A (2.6) BS04 NI 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    396 8dcb:A (2.6) BS05 NI 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    397 8dcb:B (2.6) BS04 NI 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    398 8dcb:B (2.6) BS05 NI 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    399 8dcb:B (2.6) BS06 NI 3.1.-.-
    6.5.1.8    		 GO:0006396 ... O59245 36130078
    400 8hfb:A (2.24) BS01 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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