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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2erm:A (-1.00) BS04 NGY ? GO:0001525 ... P05230 16995857
    2 3uan:A (1.844) BS05 NGY 2.8.2.23 GO:0005794 ... O35310 22431632
    3 3uan:B (1.844) BS05 NGY 2.8.2.23 GO:0005794 ... O35310 22431632
    4 5gwf:B (1.55) BS01 NGY ? GO:0005576 ... B9W5G6 28630155
    5 5gwf:D (1.55) BS01 NGY ? GO:0005576 ... B9W5G6 28630155
    6 6xkg:A (1.55) BS05 NGY 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    7 6xkg:B (1.55) BS07 NGY 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    8 7p24:AAA (0.97) BS02 NGY ? GO:0016787 ... Q8A2X8 35710619
    9 7pr8:A (1.66) BS03 NGY 3.2.1.166 GO:0016020 ... Q9Y251 35881786
    10 7prb:A (1.31) BS02 NGY ? N/A Q63T97 35881786
    11 7prb:B (1.31) BS02 NGY ? N/A Q63T97 35881786
    12 7psk:A (1.09) BS02 NGY ? GO:0016020 ... C1F2K5 35881786
    13 7wdt:A (1.65) BS02 NGY 3.2.1.52 GO:0004553 ... D4QAP5 36864192
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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