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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ofd:A (1.96) BS01 NGA N/A N/A N/A 17391699
    2 2ofd:B (1.96) BS01 NGA N/A N/A N/A 17391699
    3 2ofd:B (1.96) BS02 NGA N/A N/A N/A 17391699
    4 2vmc:A (1.9) BS02 NGA ? GO:0005737 ... P42530 18384150 PDBbind: -logKd/Ki=2.94, Kd=1.15mM
    5 2zqo:A (1.8) BS01 NGA ? N/A O96048 19153466
    6 2zqo:A (1.8) BS02 NGA ? N/A O96048 19153466
    7 2zqo:B (1.8) BS01 NGA ? N/A O96048 19153466
    8 2zqo:B (1.8) BS02 NGA ? N/A O96048 19153466
    9 4ary:A (2.95) BS01 NGA ? GO:0001907 ... P05068 N/A
    10 4ary:B (2.95) BS01 NGA ? GO:0001907 ... P05068 N/A
    11 4ary:C (2.95) BS01 NGA ? GO:0001907 ... P05068 N/A
    12 4ary:D (2.95) BS01 NGA ? GO:0001907 ... P05068 N/A
    13 4owk:A (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    14 4owk:B (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    15 4owk:C (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    16 4owk:D (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    17 4owk:E (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    18 4owk:F (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    19 4owk:G (2.0) BS01 NGA ? N/A P19247 24862282 MOAD: Kd=131uM
    20 5ac4:A (2.08) BS01 NGA 3.2.1.52 GO:0004563 ... A0A0H2US73 26491009
    21 5ac4:B (2.08) BS01 NGA 3.2.1.52 GO:0004563 ... A0A0H2US73 26491009
    22 6li7:A (2.098) BS05 NGA ? N/A E7E2M2 32112837
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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