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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3myr:B (2.1) BS02 NFV ? GO:0005886 ... D3RV26 20673834
    2 3myr:D (2.1) BS01 NFV ? GO:0005886 ... D3RV26 20673834
    3 3myr:F (2.1) BS02 NFV ? GO:0005886 ... D3RV26 20673834
    4 3myr:H (2.1) BS02 NFV ? GO:0005886 ... D3RV26 20673834
    5 4iub:L (1.61) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 24705592
    6 4iuc:L (1.45) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 24705592
    7 4iud:L (1.45) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 24705592
    8 4ttt:L (1.72) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 N/A
    9 5a4m:L (1.7) BS01 NFV 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    10 5a4m:M (1.7) BS01 NFV 1.12.99.6 GO:0005515 ... P0ACD8 26619250
    11 5d51:L (1.47) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 26913499
    12 5mdj:L (1.48) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 29463722
    13 5mdk:L (1.5) BS02 NFV 1.12.99.6 GO:0005515 ... P31891 29463722
    14 5mdl:L (1.41) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 29463722
    15 5xlf:L (1.71) BS02 NFV 1.12.2.1 GO:0008901 ... P21852 28967475
    16 5xlg:L (1.64) BS02 NFV 1.12.2.1 GO:0008901 ... P21852 28967475
    17 5xlh:L (1.93) BS02 NFV 1.12.2.1 GO:0008901 ... P21852 28967475
    18 5xvc:L (2.05) BS02 NFV 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    19 5xvc:M (2.05) BS02 NFV 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    20 5xvd:L (1.57) BS02 NFV 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    21 5xvd:M (1.57) BS02 NFV 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    22 7odh:L (1.34) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 N/A
    23 8pou:L (1.65) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 37860641
    24 8pow:L (1.61) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 37860641
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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