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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3rgw:L (1.5) BS01 NFU 1.12.99.6 GO:0005515 ... P31891 22002606
    2 4c3o:A (3.2) BS01 NFU 1.12.99.6 GO:0005886 ... Q8ZPH0 24428762
    3 4c3o:C (3.2) BS01 NFU 1.12.99.6 GO:0005886 ... Q8ZPH0 24428762
    4 4c3o:E (3.2) BS01 NFU 1.12.99.6 GO:0005886 ... Q8ZPH0 24428762
    5 4omf:A (1.71) BS02 NFU 1.12.98.1 GO:0008901 ... D9PYF9 24887099
    6 5aa5:C (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    7 5aa5:E (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    8 5aa5:G (2.497) BS02 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    9 5aa5:I (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    10 5aa5:K (2.497) BS02 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    11 5aa5:L (2.497) BS01 NFU 1.12.99.6 GO:0016151 ... Q7WXQ3 26749450
    12 5odc:F (2.3) BS03 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    13 5odc:L (2.3) BS02 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    14 5odh:F (2.2) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    15 5odh:L (2.2) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    16 5odi:F (2.4) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    17 5odi:L (2.4) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    18 5odq:F (2.15) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    19 5odq:L (2.15) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    20 5odr:F (2.2) BS01 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    21 5odr:L (2.2) BS02 NFU 1.12.1.2
    1.12.99.6    		 GO:0008901 ... A0A2D0TCA6 28818947
    22 5xle:L (1.69) BS02 NFU 1.12.2.1 GO:0008901 ... P21852 28967475
    23 5xvb:L (1.84) BS02 NFU 1.12.99.6 GO:0005886 ... A0A3B6UEP7 30328414
    24 5xvb:M (1.84) BS02 NFU 1.12.99.6 GO:0005886 ... A0A3B6UEP7 30328414
    25 5y4n:L (1.69) BS03 NFU 1.12.2.1 GO:0008901 ... P21852 28967475
    26 6cfw:L (3.7) BS01 NFU 1.12.7.2 GO:0016151 ... Q8U0Z6 29754813
    27 6qgr:A (1.839) BS02 NFU 1.12.98.1 GO:0008901 ... A0A0E3QYL7 31591784
    28 6qii:A (2.28) BS02 NFU 1.12.98.1 GO:0008901 ... A0A0E3QYL7 31591784
    29 7odg:L (1.62) BS01 NFU 1.12.99.6 GO:0005515 ... P31891 N/A
    30 7vxq:A (1.77) BS02 NFU 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    31 7vxq:C (1.77) BS02 NFU 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    32 8pov:L (1.92) BS01 NFU 1.12.99.6 GO:0005515 ... P31891 37860641
    33 8pox:L (1.6) BS01 NFU N/A N/A P31891 37860641
    34 8poz:L (1.65) BS01 NFU N/A N/A P31891 37860641
    35 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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