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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cr5:A (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    2 1cr5:A (2.3) BS02 NEN ? GO:0016887 ... P18759 10611286
    3 1cr5:B (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    4 1cr5:C (2.3) BS01 NEN ? GO:0016887 ... P18759 10611286
    5 1cr5:C (2.3) BS02 NEN ? GO:0016887 ... P18759 10611286
    6 1rq1:A (2.8) BS01 NEN 1.8.4.- GO:0005783 ... Q03103 15163408
    7 3m31:A (1.85) BS01 NEN 1.8.4.- GO:0005783 ... Q03103 20669236
    8 3nvj:A (3.2) BS01 NEN 1.8.4.- GO:0005783 ... Q03103 20669236
    9 4h46:A (2.5) BS04 NEN 3.1.3.11 GO:0005737 ... P00636 N/A
    10 4us0:R (2.17) BS01 NEN 3.6.5.2 GO:0003924 ... P01112 25695162
    11 6xb1:A (1.8) BS01 NEN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 33063790
    12 6xb2:A (2.1) BS01 NEN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 33063790
    13 6xb2:A (2.1) BS02 NEN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 33063790
    14 7su8:A (2.65) BS01 NEN 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    15 7su8:B (2.65) BS01 NEN 4.1.2.25 GO:0004150 ... A0A5P8YJX5 N/A
    16 8e8v:A (2.45) BS01 NEN 1.5.1.8
    1.5.1.9    		 N/A Q9UDR5 36128717
    17 8e8v:B (2.45) BS01 NEN 1.5.1.8
    1.5.1.9    		 N/A Q9UDR5 36128717
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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