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BioLiP
Download all results in tab-seperated text for 2542 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 8p2j:G (1.73) BS02 NDP ? GO:0000166 ... A0A179UH34 37581897
    2402 8p2j:H (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    2403 8p2j:I (1.73) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    2404 8pvd:A (3.4) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 38011573
    2405 8pw5:P1 (3.6) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2406 8pw6:P1 (3.3) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2407 8pw7:P1 (3.5) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2408 8q0a:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    2409 8q0f:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    2410 8q0j:P (3.8) BS01 NDP ? GO:0005739 ... P34943 38870289
    2411 8q0m:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    2412 8q0o:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    2413 8q0q:P (3.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    2414 8q1p:P (2.9) BS01 NDP ? GO:0005739 ... P34943 38870289
    2415 8q1u:P (3.3) BS01 NDP ? GO:0005739 ... P34943 38870289
    2416 8q1y:P (2.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    2417 8q25:P (2.8) BS01 NDP ? GO:0005739 ... P34943 38870289
    2418 8q45:P (2.7) BS01 NDP ? GO:0005739 ... P34943 38870289
    2419 8q46:P (2.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    2420 8q47:P (2.9) BS01 NDP ? GO:0005739 ... P34943 38870289
    2421 8q48:P (2.5) BS01 NDP ? GO:0005739 ... P34943 38870289
    2422 8q4a:P (2.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    2423 8qhe:A (1.6) BS01 NDP ? GO:0016491 ... A0A0S7DXU4 37782882
    2424 8qt7:A (2.2) BS01 NDP N/A GO:0016020 ... Q8CZ28 39039317
    2425 8qta:A (2.64) BS01 NDP N/A GO:0016020 ... Q8CZ28 39039317
    2426 8rgp:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2427 8rgq:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2428 8rgr:P (2.9) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2429 8rgt:P (3.1) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    2430 8rs5:A (1.95) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    2431 8rs5:B (1.95) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    2432 8rwl:A (2.3) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    2433 8rwl:B (2.3) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    2434 8sgv:A (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    2435 8sgv:B (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    2436 8sgv:C (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    2437 8sgv:D (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    2438 8sxd:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2439 8u85:A (3.2) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    2440 8u85:C (3.2) BS04 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    2441 8u86:A (3.3) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    2442 8u86:C (3.3) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    2443 8u87:A (3.86) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    2444 8u87:C (3.86) BS04 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    2445 8ud1:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2446 8ueo:1P (3.8) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2447 8uep:1P (3.4) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2448 8ueq:1P (3.4) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2449 8uer:1P (3.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2450 8ues:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2451 8uet:1P (3.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2452 8ueu:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2453 8uev:1P (3.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2454 8uew:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2455 8uex:1P (3.9) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2456 8uey:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2457 8uez:1P (3.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2458 8ugh:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2459 8ugi:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2460 8ugj:1P (2.3) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2461 8ugn:1P (2.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2462 8ugn:5P (2.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2463 8ugr:1P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2464 8ugr:5P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    2465 8upn:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2466 8upp:A (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2467 8upp:A (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2468 8upp:B (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2469 8upp:B (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2470 8upp:C (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2471 8upp:C (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2472 8upp:D (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2473 8upp:D (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2474 8upp:E (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2475 8upp:E (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2476 8upp:F (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2477 8upp:F (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2478 8upp:G (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2479 8upp:H (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2480 8upp:H (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2481 8upp:I (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2482 8upp:I (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2483 8upp:J (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2484 8upp:J (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2485 8upp:K (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2486 8upp:K (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2487 8upp:L (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    2488 8uzm:A (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    2489 8uzm:B (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    2490 8uzm:C (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    2491 8uzm:D (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    2492 8vh9:A (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2493 8vh9:B (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2494 8vha:B (2.28) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2495 8vha:D (2.28) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2496 8vhb:A (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2497 8vhb:C (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2498 8vhc:A (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2499 8vhc:B (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    2500 8wej:B (2.79) BS03 NDP 1.-.-.- GO:0005515 ... P04839 38355798
    2501 8wgm:A (2.15) BS01 NDP N/A N/A A7UD81 39250850
    2502 8wgm:B (2.15) BS02 NDP N/A N/A A7UD81 39250850
    2503 8wgn:A (2.0) BS01 NDP N/A N/A P00374 39250850
    2504 8wzh:A (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2505 8wzh:B (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2506 8wzh:C (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2507 8wzh:D (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2508 8wzj:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2509 8wzj:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2510 8wzj:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2511 8wzj:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2512 8wzk:A (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2513 8wzk:B (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2514 8wzk:C (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2515 8wzk:D (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2516 8wzm:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2517 8wzm:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2518 8wzm:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2519 8wzm:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    2520 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2521 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2522 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2523 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2524 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2525 8xd0:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2526 8xd6:A (2.79) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    2527 8yq8:A (2.1) BS02 NDP N/A N/A D9N170 39026651
    2528 8yq8:B (2.1) BS03 NDP N/A N/A D9N170 39026651
    2529 8yq9:A (2.4) BS01 NDP N/A N/A D9N170 39026651
    2530 8yq9:B (2.4) BS02 NDP N/A N/A D9N170 39026651
    2531 8znb:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    2532 8znc:A (2.41) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    2533 8znd:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    2534 8zng:A (2.5) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    2535 9bdj:A (4.0) BS02 NDP N/A N/A P00432 N/A
    2536 9bdj:B (4.0) BS02 NDP N/A N/A P00432 N/A
    2537 9bdj:C (4.0) BS02 NDP N/A N/A P00432 N/A
    2538 9bdj:D (4.0) BS02 NDP N/A N/A P00432 N/A
    2539 9cly:A (2.16) BS01 NDP N/A N/A Q8E0R2 N/A
    2540 9cly:B (2.16) BS01 NDP N/A N/A Q8E0R2 N/A
    2541 9end:A (1.95) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    2542 9end:B (1.95) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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