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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2542 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 7f7l:B (2.25) BS01 NDP ? GO:0000166 ... A0A5J6VLZ7 N/A
    2002 7fgw:A (2.15) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2003 7fgw:B (2.15) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2004 7fgw:C (2.15) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2005 7fgw:D (2.15) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2006 7fgx:A (2.05) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2007 7fgx:B (2.05) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2008 7fgx:C (2.05) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2009 7fgx:D (2.05) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2010 7fgy:A (2.67) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2011 7fgy:B (2.67) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2012 7fgy:C (2.67) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2013 7fgy:D (2.67) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    2014 7jk9:A (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2015 7jk9:AA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2016 7jk9:B (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2017 7jk9:BA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2018 7jk9:C (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2019 7jk9:CA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2020 7jk9:D (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2021 7jk9:DA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2022 7jk9:E (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2023 7jk9:EA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2024 7jk9:F (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2025 7jk9:FA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2026 7jk9:G (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2027 7jk9:GA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2028 7jk9:H (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2029 7jk9:HA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2030 7jk9:I (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2031 7jk9:IA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2032 7jk9:J (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2033 7jk9:JA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2034 7jk9:K (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2035 7jk9:KA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2036 7jk9:L (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2037 7jk9:LA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2038 7jk9:M (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2039 7jk9:MA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2040 7jk9:N (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2041 7jk9:NA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2042 7jk9:O (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2043 7jk9:OA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2044 7jk9:P (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2045 7jk9:Q (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2046 7jk9:R (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2047 7jk9:S (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2048 7jk9:T (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2049 7jk9:V (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2050 7jk9:W (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2051 7jk9:X (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2052 7jk9:Y (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2053 7jk9:Z (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2054 7kh7:A (2.63) BS02 NDP 1.1.1.86 GO:0000287 ... Q2FWK4 33215746
    2055 7nm8:AAA (1.7) BS01 NDP N/A GO:0016491 ... N/A 34151573
    2056 7o6y:E (3.4) BS02 NDP ? GO:0005739 ... Q6C7X4 34767441
    2057 7o71:E (2.4) BS02 NDP ? GO:0005739 ... Q6C7X4 34767441
    2058 7ocp:A (2.75) BS02 NDP ? GO:0000166 ... D0C7J2 35363566
    2059 7ocp:B (2.75) BS01 NDP ? GO:0000166 ... D0C7J2 35363566
    2060 7ocr:A (2.6) BS01 NDP ? GO:0000166 ... D0C7J2 35363566
    2061 7ocr:B (2.6) BS01 NDP ? GO:0000166 ... D0C7J2 35363566
    2062 7oct:A (2.85) BS02 NDP ? GO:0000166 ... D0C7J2 35363566
    2063 7oct:B (2.85) BS02 NDP ? GO:0000166 ... D0C7J2 35363566
    2064 7og3:A (1.904) BS01 NDP ? GO:0000166 ... A0A5P2XKZ4 N/A
    2065 7og3:B (1.904) BS01 NDP ? GO:0000166 ... A0A5P2XKZ4 N/A
    2066 7p8w:A (2.2) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 35275189
    2067 7p8w:B (2.2) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 35275189
    2068 7p8w:C (2.2) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 35275189
    2069 7p8w:D (2.2) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 35275189
    2070 7pjm:A (2.1) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2071 7pjm:A (2.1) BS04 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2072 7pjm:B (2.1) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2073 7pjm:B (2.1) BS04 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2074 7pjm:C (2.1) BS03 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2075 7pjn:A (2.45) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2076 7pjn:B (2.45) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2077 7pjn:C (2.45) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2078 7pjn:D (2.45) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 35970853
    2079 7psa:P (3.4) BS01 NDP ? GO:0003954 ... Q9DC69 35063503
    2080 7pxx:A (1.81) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 35400669
    2081 7pxx:B (1.81) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 35400669
    2082 7pxx:C (1.81) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 35400669
    2083 7pxx:D (1.81) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 35400669
    2084 7q3a:A (2.0) BS01 NDP ? GO:0000166 ... B1MJN9 35470425
    2085 7qsd:P (3.1) BS01 NDP ? GO:0005739 ... P34943 36701435
    2086 7qsk:P (2.84) BS01 NDP ? GO:0005739 ... P34943 35589726
    2087 7qsl:P (2.76) BS01 NDP ? GO:0005739 ... P34943 35589726
    2088 7qsm:P (2.3) BS01 NDP ? GO:0005739 ... P34943 35589726
    2089 7qsn:P (2.81) BS01 NDP ? GO:0005739 ... P34943 35589726
    2090 7qso:P (3.02) BS01 NDP ? GO:0005739 ... P34943 35589726
    2091 7r41:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    2092 7r42:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    2093 7r43:P (2.4) BS01 NDP ? GO:0005739 ... P34943 36701435
    2094 7r44:P (2.4) BS01 NDP ? GO:0005739 ... P34943 36701435
    2095 7r45:P (2.4) BS01 NDP ? GO:0005739 ... P34943 36701435
    2096 7r46:P (2.4) BS01 NDP ? GO:0005739 ... P34943 36701435
    2097 7r47:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    2098 7r48:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    2099 7r4c:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    2100 7r4d:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    2101 7r4f:P (2.4) BS01 NDP ? GO:0005739 ... P34943 36701435
    2102 7r4g:P (2.5) BS01 NDP ? GO:0005739 ... P34943 36701435
    2103 7r6g:A (2.61) BS02 NDP 1.5.1.3 GO:0004146 ... P11731 35562546
    2104 7r6g:B (2.61) BS02 NDP 1.5.1.3 GO:0004146 ... P11731 35562546
    2105 7rdu:A (2.502) BS02 NDP 1.1.1.86 GO:0000287 ... Q5HVD9 N/A
    2106 7s04:A (2.52) BS03 NDP 1.1.1.267 GO:0008299 ... B7H1U5 34672535
    2107 7tgh:A9 (2.6) BS01 NDP ? GO:0005739 ... I7MLH2 35357889
    2108 7toc:A (2.43) BS01 NDP 1.1.1.86 GO:0000166 ... A0A2H0ZMH9 N/A
    2109 7toc:A (2.43) BS03 NDP 1.1.1.86 GO:0000166 ... A0A2H0ZMH9 N/A
    2110 7toc:B (2.43) BS01 NDP 1.1.1.86 GO:0000166 ... A0A2H0ZMH9 N/A
    2111 7toc:B (2.43) BS02 NDP 1.1.1.86 GO:0000166 ... A0A2H0ZMH9 N/A
    2112 7v2c:J (2.9) BS01 NDP ? N/A A0A287AE88 35145322
    2113 7v2d:J (3.3) BS01 NDP ? N/A A0A287AE88 35145322
    2114 7v2e:J (2.8) BS01 NDP ? N/A A0A287AE88 35145322
    2115 7v2f:J (3.1) BS01 NDP ? N/A A0A287AE88 35145322
    2116 7v2h:J (2.5) BS01 NDP ? N/A A0A287AE88 35145322
    2117 7v2k:J (2.7) BS01 NDP ? N/A A0A287AE88 35145322
    2118 7v2r:J (2.6) BS01 NDP ? N/A A0A287AE88 35145322
    2119 7v30:J (2.7) BS01 NDP ? N/A A0A287AE88 35145322
    2120 7v31:J (2.9) BS01 NDP ? N/A A0A287AE88 35145322
    2121 7v32:J (3.2) BS01 NDP ? N/A A0A287AE88 35145322
    2122 7v33:J (2.6) BS01 NDP ? N/A A0A287AE88 35145322
    2123 7v3m:J (2.9) BS01 NDP ? N/A A0A287AE88 35145322
    2124 7vb7:J (2.4) BS01 NDP ? N/A A0A287AE88 35145322
    2125 7vbn:J (2.4) BS01 NDP ? N/A A0A287AE88 35145322
    2126 7vbz:J (2.4) BS01 NDP ? N/A A0A287AE88 35145322
    2127 7vd9:A (2.29) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 34907237
    2128 7vd9:B (2.29) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 34907237
    2129 7vd9:C (2.29) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 34907237
    2130 7vd9:D (2.29) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 34907237
    2131 7vwj:J (2.6) BS01 NDP ? N/A A0A287AE88 35145322
    2132 7vxp:J (2.7) BS01 NDP ? N/A A0A287AE88 35145322
    2133 7vxu:J (2.8) BS01 NDP ? GO:0005739 ... A0A4X1ULW2 35145322
    2134 7vy8:J (2.6) BS01 NDP ? N/A A0A287AE88 35145322
    2135 7vya:J (2.8) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2136 7vyf:J (2.8) BS01 NDP ? N/A A0A287AE88 35145322
    2137 7vyh:J (2.9) BS01 NDP ? N/A A0A287AE88 35145322
    2138 7vyn:J (2.4) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2139 7vz1:J (2.5) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2140 7vzv:J (3.2) BS01 NDP ? N/A A0A287AE88 35145322
    2141 7vzw:J (3.2) BS01 NDP ? N/A A0A287AE88 35145322
    2142 7w00:J (3.5) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2143 7w0h:J (3.4) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2144 7w0r:J (2.8) BS01 NDP ? N/A A0A287AE88 35145322
    2145 7w0y:J (3.4) BS01 NDP ? GO:0005739 ... A0A480QJC4 35145322
    2146 7w1o:J (3.5) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2147 7w1p:J (3.1) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2148 7w1t:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2149 7w1u:J (3.2) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2150 7w1v:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2151 7w1w:A (1.82) BS01 NDP ? GO:0000166 ... A0A5J6VLZ7 N/A
    2152 7w1w:B (1.82) BS01 NDP ? GO:0000166 ... A0A5J6VLZ7 N/A
    2153 7w1x:A (1.9) BS01 NDP ? GO:0000166 ... A0A5J6VMF4 N/A
    2154 7w1x:B (1.9) BS01 NDP ? GO:0000166 ... A0A5J6VMF4 N/A
    2155 7w1z:J (2.6) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2156 7w20:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2157 7w2k:J (2.9) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2158 7w2l:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2159 7w2r:J (2.9) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2160 7w2u:J (2.6) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2161 7w2y:J (2.7) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2162 7w31:J (3.1) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2163 7w32:J (2.9) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2164 7w35:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2165 7w4c:J (2.7) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2166 7w4d:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2167 7w4e:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2168 7w4f:J (2.7) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2169 7w4g:J (3.1) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2170 7w4j:J (3.2) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2171 7w4k:J (3.2) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2172 7w4l:J (3.1) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2173 7w4m:J (3.3) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2174 7w4n:J (3.0) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2175 7w4q:J (3.3) BS01 NDP ? GO:0005739 ... F1SL07 35145322
    2176 7w5n:A (2.988) BS01 NDP ? GO:0000166 ... Q47943 37679059
    2177 7w5n:B (2.988) BS01 NDP ? GO:0000166 ... Q47943 37679059
    2178 7w5n:C (2.988) BS01 NDP ? GO:0000166 ... Q47943 37679059
    2179 7w5n:D (2.988) BS01 NDP ? GO:0000166 ... Q47943 37679059
    2180 7x11:A (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2181 7x11:B (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2182 7x11:C (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2183 7x11:D (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2184 7x12:A (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2185 7x12:B (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2186 7x12:C (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2187 7x12:D (2.07) BS02 NDP 1.1.1.40 GO:0000287 ... P48163 35819845
    2188 7xh2:A (2.8) BS01 NDP ? GO:0000166 ... Q5JCL3 36970210
    2189 7xh4:A (2.2) BS02 NDP ? GO:0000166 ... Q5JCL3 36970210
    2190 7xwi:A (2.22) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2191 7xwi:B (2.22) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2192 7xwi:C (2.22) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2193 7xwi:D (2.22) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2194 7xwj:A (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2195 7xwj:B (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2196 7xwj:C (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2197 7xwj:D (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2198 7xwk:A (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2199 7xwk:B (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    2200 7xwk:C (2.12) BS01 NDP 1.1.1.1 GO:0000166 ... A0A888VSF1 36176222
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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