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BioLiP
Download all results in tab-seperated text for 2542 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a4i:A (1.5) BS01 NDP 1.5.1.5
    3.5.4.9
    6.3.4.3
    GO:0003824 ... P11586 9519408
    2 1a4i:B (1.5) BS01 NDP 1.5.1.5
    3.5.4.9
    6.3.4.3
    GO:0003824 ... P11586 9519408
    3 1a80:A (2.1) BS01 NDP 1.1.1.346 GO:0005737 ... P06632 9618487
    4 1abn:A (2.4) BS01 NDP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 1447221
    5 1ai9:A (1.85) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    6 1ai9:B (1.85) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    7 1aoe:A (1.6) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    8 1aoe:B (1.6) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    9 1boz:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9719595
    10 1bsv:A (2.2) BS01 NDP 1.1.1.271 GO:0005737 ... P32055 9862812
    11 1bws:A (2.2) BS01 NDP 1.1.1.271 GO:0005737 ... P32055 9817848
    12 1c3v:A (2.39) BS01 NDP 1.17.1.8 GO:0005737 ... P9WP23 12962488 MOAD: Kd=2.1uM
    13 1c3v:B (2.39) BS01 NDP 1.17.1.8 GO:0005737 ... P9WP23 12962488 MOAD: Kd=2.1uM
    14 1cyd:A (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    15 1cyd:B (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    16 1cyd:C (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    17 1cyd:D (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    18 1d1g:A (2.1) BS01 NDP 1.5.1.3 GO:0004146 ... Q60034 10731419
    19 1d1g:B (2.1) BS01 NDP 1.5.1.3 GO:0004146 ... Q60034 10731419
    20 1daj:A (2.3) BS01 NDP 1.5.1.3 GO:0004146 ... P16184 15299851
    21 1dap:A (2.2) BS01 NDP 1.4.1.16 GO:0009085 ... P04964 8885833
    22 1dap:B (2.2) BS02 NDP 1.4.1.16 GO:0009085 ... P04964 8885833
    23 1df7:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 10623528
    24 1dg5:A (2.0) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 10623528
    25 1dg7:A (1.8) BS02 NDP 1.5.1.3 GO:0004146 ... P9WNX1 10623528
    26 1dg8:A (2.0) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 10623528
    27 1dgb:A (2.2) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    28 1dgb:C (2.2) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    29 1dgf:A (1.5) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    30 1dgf:C (1.5) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    31 1dgg:A (1.8) BS03 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    32 1dgg:C (1.8) BS03 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    33 1dgh:A (2.0) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    34 1dgh:C (2.0) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 10656833
    35 1dih:A (2.2) BS01 NDP 1.17.1.8 GO:0005737 ... P04036 7893645 MOAD: Kd=2.12uM
    36 1dlr:A (2.3) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 7890613
    37 1dls:A (2.3) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 7890613
    38 1doh:A (2.1) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    39 1doh:B (2.1) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    40 1dyr:A (1.86) BS01 NDP 1.5.1.3 GO:0004146 ... P16184 7866743
    41 1e5q:A (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    42 1e5q:B (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    43 1e5q:C (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    44 1e5q:D (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    45 1e5q:E (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    46 1e5q:F (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    47 1e5q:G (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    48 1e5q:H (2.1) BS01 NDP 1.5.1.10 GO:0004753 ... Q9P4R4 11080625
    49 1e7w:A (1.75) BS01 NDP 1.5.1.33 GO:0004155 ... Q01782 11373620
    50 1e7w:B (1.75) BS01 NDP 1.5.1.33 GO:0004155 ... Q01782 11373620
    51 1e7y:A (2.48) BS02 NDP 1.1.1.363 GO:0004345 ... P11411 11106478
    52 1exb:A (2.1) BS01 NDP 1.1.1.- GO:0002244 ... P62483 10884227
    53 1f06:A (2.1) BS01 NDP 1.4.1.16 GO:0009085 ... P04964 11106178
    54 1f06:B (2.1) BS01 NDP 1.4.1.16 GO:0009085 ... P04964 11106178
    55 1frb:A (1.7) BS01 NDP 1.1.1.21 GO:0004032 ... P45377 7578036
    56 1g0n:A (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    57 1g0n:B (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    58 1g0o:A (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    59 1g0o:B (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    60 1g0o:C (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    61 1g0o:D (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    62 1gir:A (2.1) BS01 NDP ? GO:0000166 ... Q46220 12498797
    63 1gl3:A (2.6) BS02 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    64 1gl3:B (2.6) BS01 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    65 1gra:A (2.0) BS02 NDP 1.8.1.7 GO:0004362 ... P00390 2585516
    66 1grb:A (1.85) BS04 NDP 1.8.1.7 GO:0004362 ... P00390 2585516
    67 1gt8:A (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    68 1gt8:B (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    69 1gt8:C (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    70 1gt8:D (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    71 1gth:A (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    72 1gth:B (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    73 1gth:C (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    74 1gth:D (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    75 1guf:A (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    76 1guf:B (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    77 1gwh:A (1.74) BS02 NDP 1.11.1.6 GO:0004096 ... P29422 12454454
    78 1h6a:A (2.5) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    79 1h6a:B (2.5) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    80 1h6b:A (2.6) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    81 1h6b:B (2.6) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    82 1h6c:A (2.2) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    83 1h6c:B (2.2) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    84 1h6d:A (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    85 1h6d:A (2.05) BS03 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    86 1h6d:B (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    87 1h6d:B (2.05) BS03 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    88 1h6d:C (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    89 1h6d:C (2.05) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    90 1h6d:D (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    91 1h6d:D (2.05) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    92 1h6d:E (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    93 1h6d:E (2.05) BS03 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    94 1h6d:F (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    95 1h6d:F (2.05) BS03 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    96 1h6d:G (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    97 1h6d:G (2.05) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    98 1h6d:H (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    99 1h6d:H (2.05) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    100 1h6d:I (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    101 1h6d:I (2.05) BS03 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    102 1h6d:J (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    103 1h6d:J (2.05) BS03 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    104 1h6d:K (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    105 1h6d:K (2.05) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    106 1h6d:L (2.05) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    107 1h6d:L (2.05) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 11705375
    108 1h6v:A (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    109 1h6v:B (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    110 1h6v:C (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    111 1h6v:D (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    112 1h6v:E (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    113 1h6v:F (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    114 1h7x:A (2.01) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11179210
    115 1h7x:B (2.01) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11179210
    116 1h7x:C (2.01) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11179210
    117 1h7x:D (2.01) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11179210
    118 1hfp:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    119 1hfq:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    120 1hfr:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9627670
    121 1ia1:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    122 1ia1:B (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    123 1ia2:A (1.82) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    124 1ia2:B (1.82) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    125 1ia3:A (1.78) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    126 1ia3:B (1.78) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    127 1ia4:A (1.85) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    128 1ia4:B (1.85) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 11520201
    129 1ipe:A (2.5) BS01 NDP 1.1.1.236 GO:0009710 ... P50163 12741812
    130 1ipe:B (2.5) BS01 NDP 1.1.1.236 GO:0009710 ... P50163 12741812
    131 1ipf:A (2.5) BS01 NDP 1.1.1.236 GO:0009710 ... P50163 12741812
    132 1ipf:B (2.5) BS01 NDP 1.1.1.236 GO:0009710 ... P50163 12741812
    133 1iyz:A (2.8) BS01 NDP 1.6.5.5 GO:0000166 ... Q8L3C8 12837796
    134 1j3i:A (2.33) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    135 1j3i:B (2.33) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    136 1j3j:A (2.3) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    137 1j3j:B (2.3) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    138 1j3k:A (2.1) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    139 1j3k:B (2.1) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    140 1ja9:A (1.5) BS01 NDP ? GO:0000166 ... Q9HFV6 11467929
    141 1jn0:A (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    142 1jn0:B (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    143 1jn0:O (3.0) BS01 NDP 1.2.1.13 GO:0006006 ... P19866 11846565
    144 1juv:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P04382 N/A
    145 1jvs:A (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    146 1jvs:B (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    147 1k0j:A (2.2) BS02 NDP 1.14.13.2 GO:0004497 ... P20586 11805318 MOAD: Ki=1.1mM
    148 1kc1:A (2.6) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    149 1kc3:A (2.7) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    150 1kev:A (2.05) BS02 NDP 1.1.1.80 GO:0008270 ... P25984 15299659
    151 1kev:B (2.05) BS02 NDP 1.1.1.80 GO:0008270 ... P25984 15299659
    152 1kev:C (2.05) BS02 NDP 1.1.1.80 GO:0008270 ... P25984 15299659
    153 1kev:D (2.05) BS02 NDP 1.1.1.80 GO:0008270 ... P25984 15299659
    154 1klk:A (2.3) BS02 NDP 1.5.1.3 GO:0004146 ... P16184 12037296
    155 1kms:A (1.09) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 12096917
    156 1kmv:A (1.05) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 12096917
    157 1lqa:A (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    158 1lqa:B (1.604) BS01 NDP ? GO:0004033 ... P0A9T4 14519207
    159 1lqu:A (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    160 1lqu:B (1.25) BS02 NDP 1.18.1.2 GO:0004324 ... P9WIQ3 12102623
    161 1lud:A (-1.00) BS01 NDP 1.5.1.3 GO:0004146 ... P00381 12449420
    162 1m78:A (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    163 1m78:B (1.71) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    164 1m79:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    165 1m79:B (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    166 1m7a:A (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    167 1m7a:B (1.76) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    168 1mb4:A (1.84) BS02 NDP 1.2.1.11 GO:0004073 ... Q9KQG2 12493825
    169 1mb4:B (1.84) BS02 NDP 1.2.1.11 GO:0004073 ... Q9KQG2 12493825
    170 1mxf:A (2.3) BS01 NDP ? GO:0000166 ... Q8I814 16168672
    171 1mxf:B (2.3) BS01 NDP ? GO:0000166 ... Q8I814 16168672
    172 1mxf:C (2.3) BS01 NDP ? GO:0000166 ... Q8I814 16168672
    173 1mxf:D (2.3) BS01 NDP ? GO:0000166 ... Q8I814 16168672
    174 1n5d:A (2.3) BS01 NDP 1.1.1.184
    1.1.1.189
    1.1.1.196
    1.1.1.197
    1.1.1.71
    GO:0004090 ... Q28960 11279087
    175 1n7g:A (2.2) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    176 1n7g:A (2.2) BS03 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    177 1n7g:B (2.2) BS02 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    178 1n7g:B (2.2) BS03 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    179 1n7g:C (2.2) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    180 1n7g:C (2.2) BS03 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    181 1n7g:D (2.2) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    182 1n7g:D (2.2) BS02 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    183 1n7h:A (1.8) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    184 1n7h:B (1.8) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    185 1o8c:A (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    186 1o8c:B (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    187 1o8c:C (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    188 1o8c:D (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    189 1ofg:A (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    190 1ofg:A (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    191 1ofg:B (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    192 1ofg:B (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    193 1ofg:C (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    194 1ofg:C (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    195 1ofg:D (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    196 1ofg:D (2.7) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    197 1ofg:E (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    198 1ofg:F (2.7) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 8994968
    199 1ohj:A (2.5) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9374868
    200 1ohk:A (2.5) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9374868

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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