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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lh7:A (2.0) BS02 NBE ? GO:0005344 ... P02240 N/A
    2 2lh7:A (2.0) BS02 NBE ? GO:0005344 ... P02240 N/A
    3 2nss:A (2.0) BS02 NBE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 N/A
    4 2nss:A (2.0) BS03 NBE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 N/A
    5 2nss:A (2.0) BS04 NBE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 N/A
    6 2nss:A (2.0) BS05 NBE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 N/A
    7 3hu9:A (1.46) BS01 NBE 3.2.1.17 GO:0003796 ... P00720 19782087
    8 8fdj:A (1.75) BS02 NBE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 37406385
    9 8fdk:B (1.89) BS02 NBE ? GO:0004601 ... P68871 37406385
    10 8fdk:B (1.89) BS03 NBE ? GO:0004601 ... P68871 37406385
    11 8fdk:D (1.89) BS02 NBE ? GO:0004601 ... P68871 37406385
    12 8fdk:D (1.89) BS03 NBE ? GO:0004601 ... P68871 37406385
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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