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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3bjh:A (1.6) BS01 NBB ? GO:0005549 ... Q9U9J6 14594955
    2 3cz1:A (1.5) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    3 3cz1:B (1.5) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    4 3cz1:B (1.5) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    5 3d73:A (2.03) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550
    6 3d73:B (2.03) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550
    7 3d73:B (2.03) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550
    8 3d74:A (2.1) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550
    9 3d74:B (2.1) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550
    10 3d74:B (2.1) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550
    11 3d75:A (2.3) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550
    12 3d76:A (1.9) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    13 3d77:A (1.7) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550
    14 3d78:A (1.6) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    PDBbind: -logKd/Ki=7.64, Kd=23nM
    15 3d78:B (1.6) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    16 3d78:B (1.6) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=23nM
    17 3r72:A (1.15) BS01 NBB N/A GO:0005549 ... N/A N/A
    18 3r72:A (1.15) BS02 NBB N/A GO:0005549 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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