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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cgk:A (1.84) BS01 NAR 2.3.1.74 GO:0009058 ... P30074 10426957
    2 1eyq:A (1.85) BS01 NAR 5.5.1.6 GO:0009813 ... P28012 10966651
    3 1eyq:B (1.85) BS01 NAR 5.5.1.6 GO:0009813 ... P28012 10966651
    4 2brt:A (2.2) BS03 NAR 1.14.20.4 GO:0007033 ... Q96323 16106293
    5 2uxu:A (2.3) BS01 NAR ? GO:0000976 ... Q9AIU0 17466326 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    6 2uxu:B (2.3) BS01 NAR ? GO:0000976 ... Q9AIU0 17466326 MOAD: Kd=18uM
    7 4a87:A (1.24) BS01 NAR ? GO:0004864 ... P15494 22634284
    8 4d06:A (2.0) BS01 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    9 4d06:C (2.0) BS01 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    10 4d06:D (2.0) BS01 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    11 4d06:D (2.0) BS02 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    12 4d06:E (2.0) BS01 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    13 4d06:F (2.0) BS01 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    14 4d06:F (2.0) BS02 NAR 5.5.1.6 GO:0016853 ... V9P0A9 25849401
    15 4deu:A (1.599) BS01 NAR ? GO:0005179 ... P02766 22842046 MOAD: Kd=2.29uM
    PDBbind: -logKd/Ki=5.64, Kd=2.29uM
    16 4deu:B (1.599) BS01 NAR ? GO:0005179 ... P02766 22842046 MOAD: Kd=2.29uM
    PDBbind: -logKd/Ki=5.64, Kd=2.29uM
    17 4eh3:A (2.4) BS01 NAR 2.7.11.24 GO:0000077 ... Q16539 23247173 PDBbind: -logKd/Ki=3.53, IC50=292uM
    18 5wkr:A (1.4) BS01 NAR N/A GO:0016872 ... N/A 29686356
    19 5wks:A (1.5) BS01 NAR N/A GO:0016872 ... N/A 29686356
    20 6g8h:BBB (2.6) BS01 NAR ? GO:0003677 ... Q89M71 34314575
    21 6ms8:A (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    22 6ms8:D (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    23 6ms8:E (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    24 6ms8:F (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    25 6ms8:G (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    26 7bur:A (1.82) BS01 NAR 2.3.1.74 GO:0009058 ... P24826 32725893
    27 7bur:B (1.82) BS01 NAR 2.3.1.74 GO:0009058 ... P24826 32725893
    28 7vez:A (2.397) BS01 NAR N/A GO:0009058 ... N/A 34777436
    29 7vez:B (2.397) BS01 NAR N/A GO:0009058 ... N/A 34777436
    30 7vez:C (2.397) BS01 NAR N/A GO:0009058 ... N/A 34777436
    31 7vez:D (2.397) BS01 NAR N/A GO:0009058 ... N/A 34777436
    32 7vf0:A (2.399) BS01 NAR N/A GO:0009058 ... N/A 34777436
    33 7vf0:B (2.399) BS01 NAR N/A GO:0009058 ... N/A 34777436
    34 7vf0:C (2.399) BS01 NAR N/A GO:0009058 ... N/A 34777436
    35 7vf0:D (2.399) BS01 NAR N/A GO:0009058 ... N/A 34777436
    36 7yj7:A (1.997) BS01 NAR N/A GO:0009058 ... N/A 35920566
    37 7yj9:A (1.851) BS01 NAR N/A GO:0009058 ... N/A 35920566
    38 8b35:A (2.0) BS01 NAR 2.3.1.74 GO:0009058 ... Q96562 38109879
    39 8b35:B (2.0) BS01 NAR 2.3.1.74 GO:0009058 ... Q96562 38109879
    40 8feu:A (2.12) BS01 NAR ? GO:0000166 ... C5YGL7 37762209
    41 8feu:B (2.12) BS01 NAR ? GO:0000166 ... C5YGL7 37762209
    42 8few:A (2.02) BS01 NAR ? GO:0000166 ... C5YGL7 37762209
    43 8few:B (2.02) BS01 NAR ? GO:0000166 ... C5YGL7 37762209
    44 8fio:A (1.97) BS01 NAR ? GO:0000166 ... A0A1B6PND3 37762209
    45 8fio:B (1.97) BS01 NAR ? GO:0000166 ... A0A1B6PND3 37762209
    46 8gkn:A (2.7) BS02 NAR ? GO:0000166 ... T1KUK4 N/A
    47 8gkn:B (2.7) BS02 NAR ? GO:0000166 ... T1KUK4 N/A
    48 8jrd:A (1.83) BS02 NAR N/A GO:0009813 ... P24826 38735137
    49 8jrd:B (1.83) BS02 NAR N/A GO:0009813 ... P24826 38735137
    50 8v8m:A (1.82) BS02 NAR 2.3.1.74 GO:0009813 ... A0A8T0PQ54 38891840
    51 8v8m:A (1.82) BS03 NAR 2.3.1.74 GO:0009813 ... A0A8T0PQ54 38891840
    52 8v8m:C (1.82) BS01 NAR 2.3.1.74 GO:0009813 ... A0A8T0PQ54 38891840
    53 8v8m:C (1.82) BS02 NAR 2.3.1.74 GO:0009813 ... A0A8T0PQ54 38891840
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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