Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6381 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 22 23 24 25 26 27 28 29 30 31 32 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 8sxx:A (3.6) BS01 NAD N/A N/A N/A 38096827
    6202 8sxx:B (3.6) BS01 NAD N/A N/A N/A 38096827
    6203 8sxx:C (3.6) BS01 NAD N/A N/A N/A 38096827
    6204 8sxx:D (3.6) BS01 NAD N/A N/A N/A 38096827
    6205 8sxx:E (3.6) BS01 NAD N/A N/A N/A 38096827
    6206 8sxx:F (3.6) BS01 NAD N/A N/A N/A 38096827
    6207 8sxx:G (3.6) BS01 NAD N/A N/A N/A 38096827
    6208 8sxx:H (3.6) BS01 NAD N/A N/A N/A 38096827
    6209 8sxx:I (3.6) BS01 NAD N/A N/A N/A 38096827
    6210 8sxx:J (3.6) BS01 NAD N/A N/A N/A 38096827
    6211 8sxx:K (3.6) BS01 NAD N/A N/A N/A 38096827
    6212 8sxx:L (3.6) BS01 NAD N/A N/A N/A 38096827
    6213 8t0n:A (1.86) BS02 NAD 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    6214 8tdf:A (2.1) BS01 NAD ? N/A N/A 38898276
    6215 8tdf:B (2.1) BS01 NAD ? N/A N/A 38898276
    6216 8tdf:C (2.1) BS01 NAD ? N/A N/A 38898276
    6217 8tdf:D (2.1) BS01 NAD ? N/A N/A 38898276
    6218 8tdh:A (2.95) BS06 NAD N/A N/A N/A 38898276
    6219 8tdh:B (2.95) BS10 NAD N/A N/A N/A 38898276
    6220 8tdh:C (2.95) BS09 NAD N/A N/A N/A 38898276
    6221 8tdh:D (2.95) BS07 NAD N/A N/A N/A 38898276
    6222 8tdi:A (2.6) BS01 NAD N/A N/A N/A 38898276
    6223 8tdi:B (2.6) BS01 NAD N/A N/A N/A 38898276
    6224 8tdi:C (2.6) BS01 NAD N/A N/A N/A 38898276
    6225 8tdi:D (2.6) BS01 NAD N/A N/A N/A 38898276
    6226 8tdi:E (2.6) BS01 NAD N/A N/A N/A 38898276
    6227 8tdi:F (2.6) BS01 NAD N/A N/A N/A 38898276
    6228 8tdi:G (2.6) BS01 NAD N/A N/A N/A 38898276
    6229 8tdi:H (2.6) BS01 NAD N/A N/A N/A 38898276
    6230 8tdi:I (2.6) BS01 NAD N/A N/A N/A 38898276
    6231 8tdi:J (2.6) BS01 NAD N/A N/A N/A 38898276
    6232 8tdi:K (2.6) BS01 NAD N/A N/A N/A 38898276
    6233 8tdi:L (2.6) BS01 NAD N/A N/A N/A 38898276
    6234 8tfz:A (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    6235 8tfz:B (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    6236 8u7m:A (3.1) BS05 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6237 8u7m:A (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6238 8u7m:B (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6239 8u7m:B (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6240 8u7m:C (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6241 8u7m:C (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6242 8u7m:D (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6243 8u7m:D (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6244 8u7m:E (3.1) BS05 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6245 8u7m:E (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6246 8u7m:F (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6247 8u7m:F (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6248 8u7m:G (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6249 8u7m:G (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6250 8u7m:H (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6251 8u7m:H (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6252 8u7q:A (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6253 8u7q:B (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6254 8u7q:C (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6255 8u7q:D (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6256 8u7q:E (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6257 8u7q:F (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6258 8u7q:G (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6259 8u7q:H (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6260 8u7v:A (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6261 8u7v:B (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6262 8u7v:C (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6263 8u7v:D (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6264 8u7v:E (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6265 8u7v:F (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6266 8u7v:G (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6267 8u7v:H (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6268 8u8o:A (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6269 8u8o:B (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6270 8u8o:C (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6271 8u8o:D (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6272 8u8o:E (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6273 8u8o:F (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6274 8u8o:G (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6275 8u8o:H (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6276 8u8y:A (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6277 8u8y:B (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6278 8u8y:C (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6279 8u8y:D (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6280 8u8y:E (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6281 8u8y:F (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6282 8u8y:G (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6283 8u8y:H (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    6284 8uaf:B (3.18) BS01 NAD N/A N/A N/A 38096827
    6285 8uaf:C (3.18) BS01 NAD N/A N/A N/A 38096827
    6286 8uaf:E (3.18) BS01 NAD N/A N/A N/A 38096827
    6287 8uaf:F (3.18) BS01 NAD N/A N/A N/A 38096827
    6288 8uaf:G (3.18) BS01 NAD N/A N/A N/A 38096827
    6289 8uaf:H (3.18) BS01 NAD N/A N/A N/A 38096827
    6290 8uaf:J (3.18) BS01 NAD N/A N/A N/A 38096827
    6291 8uaf:L (3.18) BS01 NAD N/A N/A N/A 38096827
    6292 8usu:A (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    6293 8usu:B (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    6294 8ux2:A (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    6295 8ux2:B (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    6296 8ux2:C (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    6297 8v37:A (2.228) BS01 NAD N/A N/A Q46N53 39263660
    6298 8vlq:A (2.07) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    6299 8vlq:B (2.07) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    6300 8vr2:A (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    6301 8vr2:B (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    6302 8vr2:C (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    6303 8vr2:D (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    6304 8w0n:A (1.37) BS01 NAD N/A N/A N/A N/A
    6305 8w0n:B (1.37) BS01 NAD N/A N/A N/A N/A
    6306 8w0o:A (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6307 8w0o:B (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6308 8w0o:C (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6309 8w0o:D (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6310 8w0o:E (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6311 8w0o:F (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6312 8w0o:G (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6313 8w0o:H (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    6314 8wcf:A (1.3) BS01 NAD N/A N/A A0A4Y8A290 N/A
    6315 8wik:A (2.0) BS02 NAD 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    6316 8wop:A (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    6317 8wop:B (2.35) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    6318 8wov:A (2.25) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    6319 8wov:B (2.25) BS01 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    6320 8wow:A (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    6321 8wow:B (2.6) BS02 NAD 5.1.3.2 GO:0003978 ... Q9T0A7 38678521
    6322 8wyb:A (3.37) BS01 NAD ? N/A D4G637 38555355
    6323 8wyb:B (3.37) BS01 NAD ? N/A D4G637 38555355
    6324 8wyb:C (3.37) BS01 NAD ? N/A D4G637 38555355
    6325 8wyb:D (3.37) BS01 NAD ? N/A D4G637 38555355
    6326 8wyc:A (3.0) BS01 NAD ? N/A D4G637 38555355
    6327 8wyc:B (3.0) BS01 NAD ? N/A D4G637 38555355
    6328 8wyc:C (3.0) BS01 NAD ? N/A D4G637 38555355
    6329 8wyc:D (3.0) BS01 NAD ? N/A D4G637 38555355
    6330 8wyf:A (2.85) BS01 NAD N/A N/A D4G637 38555355
    6331 8wyf:B (2.85) BS01 NAD N/A N/A D4G637 38555355
    6332 8wyf:C (2.85) BS01 NAD N/A N/A D4G637 38555355
    6333 8wyf:D (2.85) BS01 NAD N/A N/A D4G637 38555355
    6334 8x6m:A (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    6335 8x6m:B (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    6336 8y11:A (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    6337 8y11:B (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    6338 8y11:D (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    6339 8y4b:A (1.67) BS01 NAD N/A N/A N/A 38918500
    6340 8y4b:B (1.67) BS01 NAD N/A N/A N/A 38918500
    6341 8y4b:C (1.67) BS01 NAD N/A N/A N/A 38918500
    6342 8y4b:D (1.67) BS01 NAD N/A N/A N/A 38918500
    6343 8y83:A (2.0) BS01 NAD ? N/A A0A562MSV3 N/A
    6344 8y83:B (2.0) BS01 NAD ? N/A A0A562MSV3 N/A
    6345 8ylt:A (3.09) BS01 NAD N/A N/A D4G637 39059542
    6346 8ylt:B (3.09) BS01 NAD N/A N/A D4G637 39059542
    6347 8ylt:C (3.09) BS01 NAD N/A N/A D4G637 39059542
    6348 8ylt:D (3.09) BS01 NAD N/A N/A D4G637 39059542
    6349 8zc9:A (3.14) BS01 NAD N/A N/A D4G637 39039073
    6350 8zc9:B (3.14) BS01 NAD N/A N/A D4G637 39039073
    6351 8zc9:D (3.14) BS01 NAD N/A N/A D4G637 39039073
    6352 8zc9:E (3.14) BS01 NAD N/A N/A D4G637 39039073
    6353 8zj7:A (2.65) BS02 NAD N/A N/A B7WRJ7 N/A
    6354 8zj7:B (2.65) BS01 NAD N/A N/A B7WRJ7 N/A
    6355 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6356 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6357 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6358 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6359 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6360 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6361 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6362 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    6363 9f2k:A (2.48) BS01 NAD N/A N/A G0SDP4 39145930
    6364 9fe0:B (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    6365 9fe0:D (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    6366 9fea:B (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    6367 9fea:D (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    6368 9fil:B (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    6369 9fil:D (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    6370 9iil:A (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6371 9iil:B (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6372 9iil:C (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6373 9iil:D (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6374 9iim:A (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6375 9iim:B (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6376 9iim:C (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6377 9iim:D (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    6378 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    6379 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    6380 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    6381 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218