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BioLiP
Download all results in tab-seperated text for 6381 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 6vc6:D (2.133) BS03 NAD N/A GO:0003824 ... N/A N/A
    4602 6veb:A (2.55) BS02 NAD 1.3.1.76
    2.1.1.107
    4.99.1.4
    GO:0004325 ... P25924 32054833
    4603 6vlo:A (2.05) BS02 NAD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    4604 6vlo:B (2.05) BS02 NAD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    4605 6vlo:C (2.05) BS02 NAD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    4606 6vlo:D (2.05) BS02 NAD 4.2.1.46 GO:0008460 ... Q5UR12 32083779
    4607 6vr6:A (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4608 6vr6:B (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4609 6vr6:C (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4610 6vr6:D (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4611 6vr6:E (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4612 6vr6:F (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4613 6vr6:G (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4614 6vr6:H (2.5) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4615 6vsp:A (1.9) BS01 NAD 1.1.1.- GO:0016491 ... H9XP47 33292448
    4616 6vsp:A (1.9) BS02 NAD 1.1.1.- GO:0016491 ... H9XP47 33292448
    4617 6vwf:A (2.64) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4618 6vwf:B (2.64) BS01 NAD 1.2.1.19
    1.2.1.3
    1.2.1.46
    1.2.1.47
    GO:0004029 ... P49189 32717224
    4619 6vz9:A (1.52) BS02 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    4620 6vz9:B (1.52) BS02 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 32159324
    4621 6w3z:A (2.3) BS01 NAD ? GO:0000166 ... A0A0J9XTC4 33044977
    4622 6w3z:B (2.3) BS01 NAD ? GO:0000166 ... A0A0J9XTC4 33044977
    4623 6w3z:B (2.3) BS02 NAD ? GO:0000166 ... A0A0J9XTC4 33044977
    4624 6w3z:C (2.3) BS01 NAD ? GO:0000166 ... A0A0J9XTC4 33044977
    4625 6w3z:C (2.3) BS02 NAD ? GO:0000166 ... A0A0J9XTC4 33044977
    4626 6w3z:D (2.3) BS01 NAD ? GO:0000166 ... A0A0J9XTC4 33044977
    4627 6wbt:A (2.52) BS03 NAD N/A GO:0003824 ... N/A N/A
    4628 6wbt:B (2.52) BS02 NAD N/A GO:0003824 ... N/A N/A
    4629 6wbt:C (2.52) BS03 NAD N/A GO:0003824 ... N/A N/A
    4630 6wbt:D (2.52) BS03 NAD N/A GO:0003824 ... N/A N/A
    4631 6wj9:A (2.11) BS01 NAD ? GO:0000166 ... Q4KCF6 32601062
    4632 6wj9:B (2.11) BS01 NAD ? GO:0000166 ... Q4KCF6 32601062
    4633 6wja:A (2.094) BS01 NAD ? GO:0000166 ... Q4KCF6 32601062
    4634 6wja:B (2.094) BS01 NAD ? GO:0000166 ... Q4KCF6 32601062
    4635 6wjb:A (2.1) BS01 NAD ? GO:0000166 ... Q4KCF6 32601062
    4636 6wjb:B (2.1) BS01 NAD ? GO:0000166 ... Q4KCF6 32601062
    4637 6wkw:A (3.6) BS01 NAD ? GO:0003714 ... P56545 33264605
    4638 6wkw:B (3.6) BS01 NAD ? GO:0003714 ... P56545 33264605
    4639 6wkw:C (3.6) BS01 NAD ? GO:0003714 ... P56545 33264605
    4640 6wkw:D (3.6) BS01 NAD ? GO:0003714 ... P56545 33264605
    4641 6wsb:A (1.55) BS01 NAD 1.2.1.8 GO:0008802 ... Q3JLL8 35102892
    4642 6wsb:B (1.55) BS01 NAD 1.2.1.8 GO:0008802 ... Q3JLL8 35102892
    4643 6wyc:A (1.5) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4644 6wyc:B (1.5) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4645 6wyc:C (1.5) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4646 6wyc:D (1.5) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4647 6x2e:A (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4648 6x2e:C (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4649 6x2e:D (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0CE13 33058314
    4650 6x9b:A (1.46) BS02 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 33333077
    4651 6x9b:B (1.46) BS02 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 33333077
    4652 6x9d:A (1.54) BS03 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 33333077
    4653 6x9d:B (1.54) BS03 NAD 1.2.1.88
    1.5.5.2
    GO:0000166 ... F7X6I3 33333077
    4654 6x9l:A (2.52) BS02 NAD ? GO:0000166 ... Q87YZ5 32796031
    4655 6x9l:B (2.52) BS01 NAD ? GO:0000166 ... Q87YZ5 32796031
    4656 6xew:A (2.0) BS01 NAD 1.1.1.- GO:0016491 ... H9XP47 33292448
    4657 6xew:A (2.0) BS02 NAD 1.1.1.- GO:0016491 ... H9XP47 33292448
    4658 6xex:A (1.8) BS01 NAD 1.1.1.- GO:0016491 ... H9XP47 33292448
    4659 6xmy:A (1.4) BS01 NAD 1.1.1.262 GO:0000166 ... Q3V872 N/A
    4660 6xxi:A (1.679) BS01 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4661 6xxi:A (1.679) BS02 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4662 6xxi:B (1.679) BS01 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4663 6xxi:B (1.679) BS02 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4664 6xxj:A (1.41) BS02 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4665 6xxj:A (1.41) BS04 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4666 6xxj:B (1.41) BS02 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4667 6xxj:B (1.41) BS04 NAD 2.5.1.46 GO:0005515 ... P49366 32235505
    4668 6xxy:A (2.09) BS01 NAD 1.1.1.85 GO:0000287 ... P43860 32059844
    4669 6xxy:A (2.09) BS04 NAD 1.1.1.85 GO:0000287 ... P43860 32059844
    4670 6xxy:B (2.09) BS01 NAD 1.1.1.85 GO:0000287 ... P43860 32059844
    4671 6xxy:B (2.09) BS04 NAD 1.1.1.85 GO:0000287 ... P43860 32059844
    4672 6y5p:A (1.74) BS01 NAD 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    4673 6y5p:B (1.74) BS01 NAD 2.3.2.27 GO:0007219 ... Q86Y01 32948590
    4674 6y87:A (2.15) BS01 NAD 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    4675 6y87:B (2.15) BS01 NAD 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    4676 6y87:C (2.15) BS01 NAD 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    4677 6y87:D (2.15) BS01 NAD 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    4678 6y87:E (2.15) BS01 NAD 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    4679 6y87:F (2.15) BS01 NAD 2.5.1.44 GO:0000166 ... Q6X2Y9 34605434
    4680 6y91:A (2.5) BS01 NAD 1.1.1.27 GO:0000166 ... Q6VVP7 34376783
    4681 6y91:B (2.5) BS01 NAD 1.1.1.27 GO:0000166 ... Q6VVP7 34376783
    4682 6y91:C (2.5) BS01 NAD 1.1.1.27 GO:0000166 ... Q6VVP7 34376783
    4683 6y91:D (2.5) BS01 NAD 1.1.1.27 GO:0000166 ... Q6VVP7 34376783
    4684 6yei:A (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    4685 6yei:B (2.02) BS02 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    4686 6yei:C (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    4687 6yei:D (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    4688 6yei:E (2.02) BS01 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    4689 6yei:F (2.02) BS02 NAD 1.4.1.3 GO:0004352 ... Q43314 32655590 MOAD: Kd=72uM
    4690 6ynv:e (2.8) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4691 6ynx:E (2.5) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4692 6ynx:e (2.5) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4693 6yny:E (2.7) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4694 6yny:e (2.7) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4695 6ynz:E (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4696 6ynz:E3 (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4697 6ynz:e (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4698 6ynz:e3 (3.1) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    4699 6yuu:A (2.01) BS01 NAD 1.3.1.9 GO:0004318 ... P9WGR1 33710875
    4700 6ywe:2 (2.99) BS02 NAD N/A GO:0003735 ... N/A 33056988
    4701 6ywe:E (2.99) BS02 NAD ? GO:0003723 ... Q96U12 33056988
    4702 6yws:2 (2.74) BS02 NAD N/A GO:0003735 ... N/A 33056988
    4703 6yws:E (2.74) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    4704 6ywv:2 (3.03) BS02 NAD N/A GO:0003735 ... N/A 33056988
    4705 6ywv:E (3.03) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    4706 6ywx:2 (3.1) BS02 NAD N/A GO:0003735 ... N/A 33056988
    4707 6ywx:6 (3.1) BS02 NAD ? GO:0003735 ... Q7S1Z3 33056988
    4708 6ywx:E (3.1) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    4709 6ywy:2 (3.05) BS02 NAD N/A GO:0003735 ... N/A 33056988
    4710 6ywy:E (3.05) BS03 NAD ? GO:0003723 ... Q96U12 33056988
    4711 6yxx:AF (3.9) BS02 NAD ? GO:0003735 ... A0A1G4HYD1 32679035
    4712 6yxx:AP (3.9) BS02 NAD ? GO:0003735 ... Q57U68 32679035
    4713 6yxx:Av (3.9) BS02 NAD ? N/A D0A934 32679035
    4714 6yxy:AF (3.1) BS03 NAD ? GO:0003735 ... D0A7A6 32679035
    4715 6yxy:AP (3.1) BS02 NAD ? GO:0003735 ... Q57U68 32679035
    4716 6yxy:Av (3.1) BS02 NAD ? N/A D0A934 32679035
    4717 6z3b:A (2.58) BS01 NAD 4.2.1.- GO:0000166 ... A7B558 32669363
    4718 6z3b:B (2.58) BS01 NAD 4.2.1.- GO:0000166 ... A7B558 32669363
    4719 6z3c:AAA (1.74) BS01 NAD ? GO:0000166 ... A0A2N5NNS3 32669363
    4720 6z3c:BBB (1.74) BS01 NAD ? GO:0000166 ... A0A2N5NNS3 32669363
    4721 6z5f:AAA (2.25) BS02 NAD 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 33263331
    4722 6z5f:BBB (2.25) BS01 NAD 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 33263331
    4723 6z5o:AAA (1.7) BS01 NAD 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 33263331
    4724 6z5v:AAA (2.33) BS01 NAD 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 33263331
    4725 6z5v:BBB (2.33) BS01 NAD 1.1.1.35
    4.2.1.17
    5.3.3.8
    GO:0003824 ... P07896 33263331
    4726 6zde:A (1.87) BS02 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    4727 6zdi:A (2.13) BS01 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    4728 6zl6:A (1.7) BS02 NAD N/A N/A N/A 32661196
    4729 6zl6:B (1.7) BS02 NAD N/A N/A N/A 32661196
    4730 6zla:A (2.2) BS01 NAD N/A N/A N/A 32661196
    4731 6zla:B (2.2) BS01 NAD N/A N/A N/A 32661196
    4732 6zla:C (2.2) BS01 NAD N/A N/A N/A 32661196
    4733 6zla:D (2.2) BS01 NAD N/A N/A N/A 32661196
    4734 6zld:A (1.8) BS01 NAD N/A N/A N/A 32661196
    4735 6zld:B (1.8) BS01 NAD N/A N/A N/A 32661196
    4736 6zlj:A (1.7) BS01 NAD N/A N/A N/A 32661196
    4737 6zlj:B (1.7) BS01 NAD N/A N/A N/A 32661196
    4738 6zlk:A (1.5) BS01 NAD N/A N/A N/A 32661196
    4739 6zlk:B (1.5) BS01 NAD N/A N/A N/A 32661196
    4740 6zlk:C (1.5) BS01 NAD N/A N/A N/A 32661196
    4741 6zlk:D (1.5) BS01 NAD N/A N/A N/A 32661196
    4742 6zll:A (1.85) BS02 NAD N/A N/A N/A 32661196
    4743 6zll:B (1.85) BS02 NAD N/A N/A N/A 32661196
    4744 6zll:C (1.85) BS02 NAD N/A N/A N/A 32661196
    4745 6zll:D (1.85) BS02 NAD N/A N/A N/A 32661196
    4746 6zr6:A (1.5) BS02 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    4747 6zra:A (1.73) BS03 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    4748 6zt2:A (1.95) BS02 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    4749 6zth:A (2.3) BS01 NAD ? GO:0000166 ... A0A378K488 34074754
    4750 6zth:A (2.3) BS02 NAD ? GO:0000166 ... A0A378K488 34074754
    4751 6zth:A (2.3) BS03 NAD ? GO:0000166 ... A0A378K488 34074754
    4752 6zth:A (2.3) BS04 NAD ? GO:0000166 ... A0A378K488 34074754
    4753 6zth:B (2.3) BS01 NAD ? GO:0000166 ... A0A378K488 34074754
    4754 6zth:B (2.3) BS02 NAD ? GO:0000166 ... A0A378K488 34074754
    4755 6zth:B (2.3) BS03 NAD ? GO:0000166 ... A0A378K488 34074754
    4756 6zth:B (2.3) BS04 NAD ? GO:0000166 ... A0A378K488 34074754
    4757 6zth:C (2.3) BS01 NAD ? GO:0000166 ... A0A378K488 34074754
    4758 6zth:C (2.3) BS02 NAD ? GO:0000166 ... A0A378K488 34074754
    4759 6zth:C (2.3) BS03 NAD ? GO:0000166 ... A0A378K488 34074754
    4760 6zth:C (2.3) BS04 NAD ? GO:0000166 ... A0A378K488 34074754
    4761 6zth:D (2.3) BS01 NAD ? GO:0000166 ... A0A378K488 34074754
    4762 6zth:D (2.3) BS02 NAD ? GO:0000166 ... A0A378K488 34074754
    4763 6zth:D (2.3) BS03 NAD ? GO:0000166 ... A0A378K488 34074754
    4764 6zth:D (2.3) BS04 NAD ? GO:0000166 ... A0A378K488 34074754
    4765 6zyz:A (2.27) BS02 NAD N/A GO:0016491 ... N/A 34262629
    4766 6zyz:B (2.27) BS01 NAD N/A GO:0016491 ... N/A 34262629
    4767 6zyz:C (2.27) BS01 NAD N/A GO:0016491 ... N/A 34262629
    4768 6zyz:D (2.27) BS01 NAD N/A GO:0016491 ... N/A 34262629
    4769 6zzo:A (1.28) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4770 6zzo:B (1.28) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4771 6zzo:C (1.28) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4772 6zzo:D (1.28) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4773 6zzp:A (1.84) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4774 6zzp:B (1.84) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4775 6zzp:C (1.84) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4776 6zzp:D (1.84) BS01 NAD 1.1.1.30 GO:0000166 ... Q4FRT2 33391858
    4777 6zzq:A (1.93) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4778 6zzs:A (1.85) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4779 6zzs:B (1.85) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4780 6zzs:C (1.85) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4781 6zzs:D (1.85) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4782 6zzs:E (1.85) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4783 6zzs:F (1.85) BS01 NAD ? GO:0000166 ... A0A1E3M3N6 33391858
    4784 6zzt:C (2.6) BS01 NAD N/A GO:0016491 ... N/A 34262629
    4785 7a6q:A (2.95) BS01 NAD 1.2.1.36 GO:0001758 ... P47895 33478031
    4786 7a6q:B (2.95) BS02 NAD 1.2.1.36 GO:0001758 ... P47895 33478031
    4787 7a6t:A (1.66) BS01 NAD 2.5.1.46 GO:0005515 ... P49366 36973244
    4788 7a6t:A (1.66) BS02 NAD 2.5.1.46 GO:0005515 ... P49366 36973244
    4789 7a6t:B (1.66) BS01 NAD 2.5.1.46 GO:0005515 ... P49366 36973244
    4790 7a6t:B (1.66) BS02 NAD 2.5.1.46 GO:0005515 ... P49366 36973244
    4791 7aau:A (2.301) BS03 NAD 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    4792 7aau:B (2.301) BS03 NAD 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    4793 7aau:C (2.301) BS03 NAD 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    4794 7aau:D (2.301) BS03 NAD 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    4795 7aau:E (2.301) BS03 NAD 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    4796 7aau:F (2.301) BS03 NAD 1.1.1.284 GO:0000166 ... A0A2K3D6R4 33316743
    4797 7aih:Ag (3.6) BS02 NAD ? N/A Q4Q829 33168716
    4798 7aih:G (3.6) BS02 NAD ? GO:0003735 ... Q4QF19 33168716
    4799 7ane:Ag (3.9) BS02 NAD ? N/A Q4Q829 33168716
    4800 7ane:G (3.9) BS02 NAD ? GO:0003735 ... Q4QF19 33168716

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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