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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2uyy:A (2.5) BS01 NA7 ? GO:0016491 ... Q49A26 N/A
    2 2uyy:D (2.5) BS01 NA7 ? GO:0016491 ... Q49A26 N/A
    3 2wzm:A (1.64) BS01 NA7 1.1.1.- GO:0016491 ... A0QV09 20188740 PDBbind: -logKd/Ki=5.22, Ki=6.0uM
    4 2wzm:B (1.64) BS01 NA7 1.1.1.- GO:0016491 ... A0QV09 20188740
    5 2xlu:A (2.6) BS02 NA7 1.14.13.148 GO:0000166 ... Q83XK4 20807767
    6 2xlu:B (2.6) BS02 NA7 1.14.13.148 GO:0000166 ... Q83XK4 20807767
    7 2xlu:C (2.6) BS02 NA7 1.14.13.148 GO:0000166 ... Q83XK4 20807767
    8 2xlu:D (2.6) BS02 NA7 1.14.13.148 GO:0000166 ... Q83XK4 20807767
    9 3dgz:A (2.25) BS02 NA7 1.8.1.9 GO:0000305 ... Q9JLT4 N/A
    10 4xjt:A (2.6) BS02 NA7 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 26267483
    11 5m0z:A (1.6) BS02 NA7 1.14.13.22 GO:0000166 ... A0A1L1QK39 27873437
    12 6c4t:A (2.49) BS01 NA7 1.5.1.52 GO:0016491 ... A0A0H3JT80 29618515
    13 8hap:A (2.2) BS01 NA7 1.2.1.79 GO:0008911 ... Q976X5 37227376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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