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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 993 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 6c1k:A (2.7) BS01 NA ? GO:0001518 ... A8EVM5 29769724
    602 6c1k:B (2.7) BS01 NA ? GO:0001518 ... A8EVM5 29769724
    603 6c1k:B (2.7) BS02 NA ? GO:0001518 ... A8EVM5 29769724
    604 6c1m:A (2.518) BS05 NA ? GO:0001518 ... A8EVM5 29769724
    605 6c1m:B (2.518) BS01 NA ? GO:0001518 ... A8EVM5 29769724
    606 6c1m:B (2.518) BS06 NA ? GO:0001518 ... A8EVM5 29769724
    607 6cse:M (3.24) BS01 NA ? GO:0003333 ... Q6LX42 30659158
    608 6csf:M (3.3) BS01 NA ? GO:0003333 ... Q6LX42 30659158
    609 6ctf:A (4.05) BS02 NA ? GO:0005283 ... O59010 30255846
    610 6ctf:A (4.05) BS03 NA ? GO:0005283 ... O59010 30255846
    611 6ctf:B (4.05) BS02 NA ? GO:0005283 ... O59010 30255846
    612 6ctf:B (4.05) BS03 NA ? GO:0005283 ... O59010 30255846
    613 6ctf:C (4.05) BS02 NA ? GO:0005283 ... O59010 30255846
    614 6ctf:C (4.05) BS03 NA ? GO:0005283 ... O59010 30255846
    615 6f1p:A (1.12) BS04 NA 3.2.1.17 GO:0003796 ... P00698 29717719
    616 6f1r:A (1.1) BS03 NA 3.2.1.17 GO:0003796 ... P00698 29717719
    617 6j8e:A (3.0) BS03 NA ? GO:0001518 ... Q99250 30765605
    618 6ki1:A (2.809) BS02 NA ? GO:0016020 ... Q55415 31712753
    619 6ki1:B (2.809) BS02 NA ? GO:0016020 ... Q55415 31712753
    620 6l85:A (2.302) BS02 NA ? GO:0005315 ... Q9WY99 32821837
    621 6l85:A (2.302) BS03 NA ? GO:0005315 ... Q9WY99 32821837
    622 6l85:A (2.302) BS04 NA ? GO:0005315 ... Q9WY99 32821837
    623 6l85:B (2.302) BS02 NA ? GO:0005315 ... Q9WY99 32821837
    624 6l85:B (2.302) BS03 NA ? GO:0005315 ... Q9WY99 32821837
    625 6l85:B (2.302) BS04 NA ? GO:0005315 ... Q9WY99 32821837
    626 6lgy:A (2.247) BS02 NA ? GO:0016020 ... A0A380PV03 33404531
    627 6lgy:A (2.247) BS03 NA ? GO:0016020 ... A0A380PV03 33404531
    628 6mv4:H (1.37) BS06 NA 3.4.21.22 GO:0004252 ... P00740 30725510
    629 6q92:A (1.5) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    630 6q92:B (1.5) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    631 6q9p:A (1.66) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    632 6q9p:B (1.66) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    633 6qaf:A (1.61) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    634 6qaf:B (1.61) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    635 6qxa:A (3.41) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    636 6qxa:B (3.41) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    637 6qxa:D (3.41) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 31131322
    638 6rex:A (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    639 6rex:B (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    640 6rex:C (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    641 6rex:D (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    642 6rex:E (2.7) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    643 6rez:A (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    644 6rez:B (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    645 6rez:C (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    646 6rez:D (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    647 6rez:E (2.6) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    648 6rf0:A (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    649 6rf0:B (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    650 6rf0:C (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    651 6rf0:D (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    652 6rf0:E (3.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    653 6rf1:A (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    654 6rf1:B (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    655 6rf1:C (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    656 6rf1:D (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    657 6rf1:E (2.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    658 6rf3:A (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    659 6rf3:B (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    660 6rf3:C (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    661 6rf3:D (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    662 6rf3:E (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    663 6rf4:A (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    664 6rf4:B (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    665 6rf4:C (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    666 6rf4:D (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    667 6rf4:E (2.4) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    668 6rf5:A (2.3) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    669 6rf6:A (1.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    670 6rf9:A (1.8) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    671 6rfa:A (2.2) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    672 6rfb:A (2.1) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    673 6rfc:A (2.0) BS01 NA ? GO:0016020 ... N0DKS8 30989112
    674 6rjn:A (2.295) BS04 NA 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    675 6rjn:B (2.295) BS04 NA 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    676 6rjn:C (2.295) BS03 NA 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    677 6rjn:D (2.295) BS03 NA 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    678 6rz4:A (2.7) BS02 NA ? GO:0004930 ... P0ABE7
    Q9Y271    		 31633023
    679 6rz5:A (2.53) BS02 NA ? GO:0004930 ... P0ABE7
    Q9Y271    		 31633023
    680 6rz5:B (2.53) BS03 NA ? GO:0004930 ... P0ABE7
    Q9Y271    		 31633023
    681 6tk1:A (2.5) BS02 NA ? GO:0016020 ... N0DKS8 32499654
    682 6tk2:A (2.5) BS02 NA ? GO:0016020 ... N0DKS8 32499654
    683 6v1q:A (3.11) BS01 NA ? GO:0001508 ... C4IXV6 31924746
    684 6v1q:B (3.11) BS01 NA ? GO:0001508 ... C4IXV6 31924746
    685 6v8y:A (1.53) BS01 NA ? GO:0005267 ... Q81HW2 33953928
    686 6w7p:A (1.6) BS01 NA 3.2.1.17 GO:0003796 ... P00698 32352028
    687 6wjo:A (1.693) BS02 NA ? GO:0003700 ... D9QA55 32156582
    688 6wth:A (3.06) BS01 NA ? GO:0001669 ... P37088 32729833
    689 6wtx:A (3.92) BS01 NA ? GO:0005886 ... Q9KNE0 32869741
    690 6wtx:A (3.92) BS02 NA ? GO:0005886 ... Q9KNE0 32869741
    691 6wtx:B (3.92) BS02 NA ? GO:0005886 ... Q9KNE0 32869741
    692 6wtx:B (3.92) BS03 NA ? GO:0005886 ... Q9KNE0 32869741
    693 6wtx:C (3.92) BS02 NA ? GO:0005886 ... Q9KNE0 32869741
    694 6wtx:C (3.92) BS03 NA ? GO:0005886 ... Q9KNE0 32869741
    695 6wtx:D (3.92) BS02 NA ? GO:0005886 ... Q9KNE0 32869741
    696 6wtx:D (3.92) BS03 NA ? GO:0005886 ... Q9KNE0 32869741
    697 6wzb:A (3.45) BS02 NA ? GO:0005283 ... O59010 33597752
    698 6wzb:A (3.45) BS03 NA ? GO:0005283 ... O59010 33597752
    699 6wzb:B (3.45) BS02 NA ? GO:0005283 ... O59010 33597752
    700 6wzb:B (3.45) BS03 NA ? GO:0005283 ... O59010 33597752
    701 6wzb:C (3.45) BS02 NA ? GO:0005283 ... O59010 33597752
    702 6wzb:C (3.45) BS03 NA ? GO:0005283 ... O59010 33597752
    703 6x01:A (3.65) BS02 NA ? GO:0005283 ... O59010 33597752
    704 6x01:A (3.65) BS03 NA ? GO:0005283 ... O59010 33597752
    705 6x01:B (3.65) BS02 NA ? GO:0005283 ... O59010 33597752
    706 6x01:B (3.65) BS03 NA ? GO:0005283 ... O59010 33597752
    707 6x01:C (3.65) BS02 NA ? GO:0005283 ... O59010 33597752
    708 6x01:C (3.65) BS03 NA ? GO:0005283 ... O59010 33597752
    709 6x15:A (3.05) BS01 NA ? GO:0005283 ... O59010 33155546
    710 6x15:A (3.05) BS02 NA ? GO:0005283 ... O59010 33155546
    711 6x15:A (3.05) BS03 NA ? GO:0005283 ... O59010 33155546
    712 6x15:B (3.05) BS01 NA ? GO:0005283 ... O59010 33155546
    713 6x15:B (3.05) BS02 NA ? GO:0005283 ... O59010 33155546
    714 6x15:B (3.05) BS03 NA ? GO:0005283 ... O59010 33155546
    715 6x15:C (3.05) BS01 NA ? GO:0005283 ... O59010 33155546
    716 6x15:C (3.05) BS02 NA ? GO:0005283 ... O59010 33155546
    717 6x15:C (3.05) BS03 NA ? GO:0005283 ... O59010 33155546
    718 6x2z:A (3.03) BS02 NA ? GO:0001662 ... P43005 33658209
    719 6x2z:A (3.03) BS03 NA ? GO:0001662 ... P43005 33658209
    720 6x2z:A (3.03) BS04 NA ? GO:0001662 ... P43005 33658209
    721 6x3e:A (3.42) BS02 NA ? GO:0001662 ... P43005 33658209
    722 6x3e:A (3.42) BS03 NA ? GO:0001662 ... P43005 33658209
    723 6x3e:A (3.42) BS04 NA ? GO:0001662 ... P43005 33658209
    724 6xnc:B (2.11) BS01 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    725 6xoy:B (1.64) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    726 6xrh:B (1.44) BS03 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    727 6xt0:B (1.37) BS03 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    728 6xwm:A (2.6) BS02 NA ? GO:0005886 ... O67854 32081981
    729 6xwm:A (2.6) BS03 NA ? GO:0005886 ... O67854 32081981
    730 6xwm:B (2.6) BS02 NA ? GO:0005886 ... O67854 32081981
    731 6xwm:B (2.6) BS03 NA ? GO:0005886 ... O67854 32081981
    732 6xyt:A (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    733 6xyt:A (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    734 6xyt:B (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    735 6xyt:B (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    736 6xyt:C (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    737 6xyt:C (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    738 6xyt:D (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    739 6xyt:D (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    740 6xyt:E (2.1) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    741 6xyt:E (2.1) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    742 6yby:A (1.8) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    743 6ybz:A (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    744 6ybz:B (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    745 6ybz:C (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    746 6ybz:D (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    747 6ybz:E (2.35) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    748 6yc0:A (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    749 6yc0:A (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    750 6yc0:B (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    751 6yc0:B (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    752 6yc0:C (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    753 6yc0:C (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    754 6yc0:D (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    755 6yc0:D (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    756 6yc0:E (2.7) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    757 6yc0:E (2.7) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    758 6yc1:A (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    759 6yc1:B (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    760 6yc1:C (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    761 6yc1:D (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    762 6yc1:E (2.2) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    763 6yc2:A (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    764 6yc2:B (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    765 6yc2:C (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    766 6yc2:D (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    767 6yc2:E (2.5) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    768 6yc3:A (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    769 6yc3:B (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    770 6yc3:C (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    771 6yc3:D (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    772 6yc3:E (2.0) BS02 NA ? GO:0016020 ... N0DKS8 32358514
    773 6yc4:A (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    774 6yc4:A (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    775 6yc4:B (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    776 6yc4:B (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    777 6yc4:C (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    778 6yc4:C (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    779 6yc4:D (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    780 6yc4:D (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    781 6yc4:E (2.6) BS01 NA ? GO:0016020 ... N0DKS8 32358514
    782 6yc4:E (2.6) BS03 NA ? GO:0016020 ... N0DKS8 32358514
    783 6zpl:A (3.945) BS02 NA ? GO:0016020 ... P48067 33658720
    784 6zpl:B (3.945) BS02 NA ? GO:0016020 ... P48067 33658720
    785 7ch1:A (2.6) BS03 NA ? GO:0000139 ... Q7LBE3 32818062
    786 7ch1:B (2.6) BS03 NA ? GO:0000139 ... Q7LBE3 32818062
    787 7d93:A (3.65) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    788 7d93:C (3.65) BS04 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    789 7d94:A (3.5) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    790 7d94:C (3.5) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    791 7ddf:A (4.62) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    792 7ddf:C (4.62) BS03 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    793 7ddh:A (3.46) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    794 7ddh:C (3.46) BS03 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    795 7ddi:A (3.72) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    796 7ddi:C (3.72) BS03 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    797 7ddk:A (3.5) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    798 7ddk:C (3.5) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    799 7ddl:A (3.2) BS02 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    800 7ddl:C (3.2) BS03 NA 7.2.2.13 GO:0000166 ... P05024 33318128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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