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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 993 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 193l:A (1.33) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    2 194l:A (1.4) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    3 1bgp:A (1.9) BS02 NA 1.11.1.7 GO:0004601 ... Q40069 9442067
    4 1bli:A (1.9) BS04 NA 3.2.1.1 GO:0004553 ... P06278 9551551
    5 1c9o:A (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    6 1c9o:B (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    7 1dpy:A (2.45) BS01 NA 3.1.1.4 GO:0004623 ... Q9DF52 11286555
    8 1e3x:A (1.9) BS05 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    9 1e3z:A (1.93) BS10 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    10 1e40:A (2.2) BS08 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    11 1e43:A (1.7) BS05 NA 3.2.1.1 GO:0004553 ... P00692 10924103
    12 1eja:A (2.7) BS01 NA 3.4.21.4 GO:0004252 ... P00761 10771427
    13 1glh:A (2.0) BS01 NA 3.2.1.73 GO:0004553 ... P23904 8200344
    14 1h80:A (1.6) BS05 NA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    15 1h80:B (1.6) BS05 NA 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    16 1iee:A (0.94) BS01 NA 3.2.1.17 GO:0003796 ... P00698 11468395
    17 1jou:B (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    18 1jou:D (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    19 1jou:F (1.8) BS01 NA 3.4.21.5 GO:0004252 ... P00734 12679024
    20 1jyn:A (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    21 1jyn:A (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    22 1jyn:A (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23 1jyn:A (1.8) BS08 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    24 1jyn:B (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    25 1jyn:B (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    26 1jyn:B (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    27 1jyn:B (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    28 1jyn:C (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    29 1jyn:C (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    30 1jyn:C (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    31 1jyn:C (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    32 1jyn:D (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    33 1jyn:D (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    34 1jyn:D (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    35 1jyx:A (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    36 1jyx:A (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    37 1jyx:A (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    38 1jyx:B (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    39 1jyx:B (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    40 1jyx:B (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    41 1jyx:B (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    42 1jyx:C (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    43 1jyx:C (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    44 1jyx:C (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    45 1jyx:C (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    46 1jyx:D (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    47 1jyx:D (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    48 1jyx:D (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    49 1jz2:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    50 1jz2:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    51 1jz2:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    52 1jz2:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    53 1jz2:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    54 1jz2:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    55 1jz2:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    56 1jz2:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    57 1jz2:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    58 1jz2:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    59 1jz2:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    60 1jz2:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    61 1jz4:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    62 1jz4:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    63 1jz4:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    64 1jz4:A (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    65 1jz4:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    66 1jz4:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    67 1jz4:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    68 1jz4:B (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    69 1jz4:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    70 1jz4:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    71 1jz4:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    72 1jz4:C (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    73 1jz4:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    74 1jz4:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    75 1jz4:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    76 1jz6:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    77 1jz6:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    78 1jz6:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    79 1jz6:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    80 1jz6:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    81 1jz6:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    82 1jz6:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    83 1jz6:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    84 1jz6:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    85 1jz6:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    86 1jz6:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    87 1k21:H (1.86) BS03 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    88 1k21:H (1.86) BS04 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    89 1k22:H (1.93) BS03 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    90 1k22:H (1.93) BS04 NA 3.4.21.5 GO:0004252 ... P00734 11676542
    91 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    92 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    93 1ksu:B (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    94 1lkb:A (1.7) BS02 NA 3.4.21.36 GO:0004252 ... P00772 12198296
    95 1lok:A (1.2) BS03 NA 3.4.11.10 GO:0006508 ... Q01693 12176384
    96 1lpi:A (2.0) BS01 NA 3.2.1.17 GO:0003796 ... P00698 9828016
    97 1qop:B (1.4) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    98 1sk4:A (1.65) BS01 NA ? GO:0008270 ... Q96LB9 15140887
    99 1suz:A (1.8) BS04 NA 3.1.21.4 GO:0003677 ... P04390 15170321
    100 1suz:B (1.8) BS04 NA 3.1.21.4 GO:0003677 ... P04390 15170321
    101 1tc8:A (2.7) BS01 NA 3.1.1.4 GO:0004623 ... Q6SLM2 15659372
    102 1tw8:A (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    103 1tw8:B (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    104 1tw8:C (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    105 1tw8:D (2.8) BS04 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    106 1tx3:A (2.5) BS03 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    107 1tx3:B (2.5) BS03 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    108 1tx3:C (2.5) BS03 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    109 1tx3:D (2.5) BS03 NA 3.1.21.4 GO:0003677 ... P17743 15491133
    110 1ud2:A (2.13) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    111 1ud2:A (2.13) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    112 1ud2:A (2.13) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    113 1ud3:A (2.15) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    114 1ud3:A (2.15) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    115 1ud4:A (2.15) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    116 1ud4:A (2.15) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    117 1ud4:A (2.15) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    118 1ud5:A (2.7) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    119 1ud5:A (2.7) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    120 1ud8:A (2.88) BS01 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    121 1ud8:A (2.88) BS02 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    122 1ud8:A (2.88) BS03 NA 3.2.1.1 GO:0004553 ... Q93I48 12719434
    123 1v7t:A (1.13) BS03 NA 3.2.1.17 GO:0003796 ... P00698 15039550
    124 1v7t:B (1.13) BS02 NA 3.2.1.17 GO:0003796 ... P00698 15039550
    125 2a65:A (1.65) BS01 NA ? GO:0005886 ... O67854 16041361
    126 2a65:A (1.65) BS02 NA ? GO:0005886 ... O67854 16041361
    127 2bl2:A (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    128 2bl2:B (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    129 2bl2:C (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    130 2bl2:D (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    131 2bl2:E (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    132 2bl2:F (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    133 2bl2:G (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    134 2bl2:H (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    135 2bl2:I (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    136 2bl2:J (2.1) BS01 NA 3.6.3.14 GO:0005886 ... P43457 15802565
    137 2bmi:A (2.0) BS03 NA 3.5.2.6 GO:0008270 ... P25910 9761816
    138 2bmi:B (2.0) BS03 NA 3.5.2.6 GO:0008270 ... P25910 9761816
    139 2d4i:B (1.16) BS04 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    140 2d4k:A (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    141 2d4k:N (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552138
    142 2die:A (2.1) BS04 NA 3.2.1.1 GO:0004553 ... O82839 17154418
    143 2fbb:A (1.46) BS01 NA 3.2.1.17 GO:0003796 ... P00698 16552135
    144 2fbb:A (1.46) BS02 NA 3.2.1.17 GO:0003796 ... P00698 16552135
    145 2fbb:A (1.46) BS03 NA 3.2.1.17 GO:0003796 ... P00698 16552135
    146 2fbb:A (1.46) BS04 NA 3.2.1.17 GO:0003796 ... P00698 16552135
    147 2gez:A (2.6) BS01 NA 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    148 2gez:C (2.6) BS01 NA 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    149 2gez:E (2.6) BS01 NA 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    150 2gez:G (2.6) BS01 NA 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    151 2hzl:A (1.4) BS01 NA ? GO:0015849 ... Q3J1R2 17362499
    152 2hzl:B (1.4) BS01 NA ? GO:0015849 ... Q3J1R2 17362499
    153 2iaj:A (2.5) BS04 NA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 17056061
    154 2iwf:A (1.86) BS06 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    155 2iwf:A (1.86) BS07 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    156 2iwf:A (1.86) BS08 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    157 2iwf:A (1.86) BS09 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    158 2iwf:B (1.86) BS06 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    159 2iwf:B (1.86) BS07 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    160 2iwf:B (1.86) BS08 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    161 2iwf:B (1.86) BS09 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    162 2iwf:B (1.86) BS10 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    163 2iwf:B (1.86) BS11 NA 1.7.2.4 GO:0004129 ... P94127 16904686
    164 2j9y:B (1.8) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 18004874
    165 2j9z:B (1.8) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 18004874
    166 2nwx:A (3.29) BS01 NA ? GO:0005283 ... O59010 17230192
    167 2nwx:A (3.29) BS02 NA ? GO:0005283 ... O59010 17230192
    168 2nwx:B (3.29) BS02 NA ? GO:0005283 ... O59010 17230192
    169 2nwx:B (3.29) BS03 NA ? GO:0005283 ... O59010 17230192
    170 2nwx:C (3.29) BS02 NA ? GO:0005283 ... O59010 17230192
    171 2nwx:C (3.29) BS03 NA ? GO:0005283 ... O59010 17230192
    172 2q6h:A (1.85) BS01 NA ? GO:0005886 ... O67854 17687333
    173 2q6h:A (1.85) BS02 NA ? GO:0005886 ... O67854 17687333
    174 2q72:A (1.7) BS01 NA ? GO:0005886 ... O67854 17687333
    175 2q72:A (1.7) BS02 NA ? GO:0005886 ... O67854 17687333
    176 2qb4:A (1.9) BS01 NA ? GO:0005886 ... O67854 17687333
    177 2qb4:A (1.9) BS02 NA ? GO:0005886 ... O67854 17687333
    178 2qei:A (1.85) BS01 NA ? GO:0005886 ... O67854 17687333
    179 2qei:A (1.85) BS02 NA ? GO:0005886 ... O67854 17687333
    180 2vt4:A (2.7) BS02 NA ? GO:0004930 ... P07700 18594507
    181 2vt4:B (2.7) BS02 NA ? GO:0004930 ... P07700 18594507
    182 2vt4:C (2.7) BS02 NA ? GO:0004930 ... P07700 18594507
    183 2vt4:D (2.7) BS02 NA ? GO:0004930 ... P07700 18594507
    184 2x2e:A (2.0) BS04 NA 3.6.5.5 GO:0003924 ... Q05193 20428113
    185 2x2e:D (2.0) BS04 NA 3.6.5.5 GO:0003924 ... Q05193 20428113
    186 2x2f:A (2.0) BS04 NA 3.6.5.5 GO:0003924 ... Q05193 20428113
    187 2x2f:D (2.0) BS04 NA 3.6.5.5 GO:0003924 ... Q05193 20428113
    188 2xxr:A (1.6) BS02 NA ? GO:0015276 ... P42260 21414913
    189 2xxr:B (1.6) BS02 NA ? GO:0015276 ... P42260 21414913
    190 2xxt:A (1.9) BS02 NA ? GO:0015276 ... P42260 21414913
    191 2xxt:B (1.9) BS02 NA ? GO:0015276 ... P42260 21414913
    192 2xxu:A (1.5) BS02 NA ? GO:0015276 ... P42260 21414913
    193 2xxu:B (1.5) BS02 NA ? GO:0015276 ... P42260 21414913
    194 2ydg:A (2.0) BS01 NA 3.2.1.17 GO:0003796 ... P00698 21525642
    195 2z12:A (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 17704571
    196 2z18:A (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 17704571
    197 2z19:A (1.15) BS01 NA 3.2.1.17 GO:0003796 ... P00698 17704571
    198 3b6p:A (2.3) BS02 NA 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    199 3b6p:B (2.3) BS02 NA 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    200 3b6p:C (2.3) BS02 NA 3.1.11.2 GO:0003676 ... Q91XB0 18780819

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218