Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g9s:B (2.8) BS01 N 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    2 1g9t:B (2.8) BS01 N 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    3 1phw:A (2.36) BS01 N 2.5.1.55 GO:0005737 ... P0A715 16023668 MOAD: Ki=0.5mM
    PDBbind: -logKd/Ki=3.30, Ki=0.5mM
    4 1r15:A (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    5 1r15:B (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    6 1r15:C (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    7 1r15:D (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    8 1r15:E (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    9 1r15:F (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    10 1r15:G (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    11 1r15:H (2.4) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    12 1r16:A (2.0) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    13 1r16:B (2.0) BS01 N 2.4.99.20
    3.2.2.-    		 GO:0003953 ... P29241 15016363
    14 3dzi:B (1.73) BS01 N 2.4.99.20
    3.2.2.-
    3.2.2.6    		 GO:0061809 ... P28907 18940667
    15 5z2v:A (2.2) BS02 N ? GO:0003677 ... Q9I3H9 29633970
    16 8p2k:Bv (2.9) BS02 N ? GO:0000470 ... G1SKZ8 37347872
    17 8u0z:A (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    18 8u0z:B (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218