Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bev:1 (3.0) BS01 MYR 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 N/A P12915 7773791
    2 1cmk:E (2.9) BS02 MYR 2.7.11.11 GO:0001669 ... P36887 8251932
    3 3mlm:A (2.21) BS01 MYR 3.1.1.4 GO:0004623 ... Q9IAT9 21108987
    4 3mlm:B (2.21) BS01 MYR 3.1.1.4 GO:0004623 ... Q9IAT9 21108987
    5 3pxp:A (2.3) BS01 MYR ? GO:0003677 ... A9WGF5 22844465
    6 3pxp:B (2.3) BS01 MYR ? GO:0003677 ... A9WGF5 22844465
    7 3pxp:C (2.3) BS01 MYR ? GO:0003677 ... A9WGF5 22844465
    8 3sz1:B (2.3) BS02 MYR ? GO:0003677 ... P37231 22391103 BindingDB: IC50=21000nM
    9 3usx:B (2.28) BS01 MYR ? GO:0001818 ... Q9GK12 23149273 PDBbind: -logKd/Ki=5.02, Kd=9.53uM
    10 3w9k:A (1.8) BS01 MYR ? N/A Q973T5 23836863 MOAD: Kd=0.48uM
    PDBbind: -logKd/Ki=6.32, Kd=0.48uM
    11 4x6r:A (2.4) BS02 MYR 2.7.11.11 GO:0000122 ... P05132 26278174
    12 4zfz:A (1.763) BS05 MYR ? N/A K4MU32 26758274
    13 4zfz:D (1.763) BS04 MYR ? N/A K4MU32 26758274
    14 5ezu:A (1.55) BS01 MYR ? N/A P26672 27973613
    15 5lke:A (2.8) BS01 MYR ? GO:0005515 ... P02754 30174052
    16 5lkf:A (2.5) BS01 MYR ? GO:0005515 ... P02754 30174052
    17 5uc9:A (1.903) BS01 MYR 1.14.14.18 GO:0004392 ... P30519 28132836
    18 5uc9:B (1.903) BS01 MYR 1.14.14.18 GO:0004392 ... P30519 28132836
    19 5uc9:C (1.903) BS01 MYR 1.14.14.18 GO:0004392 ... P30519 28132836
    20 5uc9:D (1.903) BS01 MYR 1.14.14.18 GO:0004392 ... P30519 28132836
    21 6iwo:A (2.35) BS01 MYR ? GO:0006869 ... A0A247D6Y2 31793077
    22 6iwo:B (2.35) BS01 MYR ? GO:0006869 ... A0A247D6Y2 31793077
    23 6iwp:A (2.4) BS01 MYR ? GO:0006869 ... A0A247D6Y2 31793077
    24 7byd:A (2.80003) BS02 MYR ? N/A B2ZHY7 32720986
    25 7byd:F (2.80003) BS02 MYR ? N/A B2ZHY7 32720986
    26 8rco:A (1.9) BS01 MYR N/A N/A P02768 38782206
    27 8rco:A (1.9) BS02 MYR N/A N/A P02768 38782206
    28 8rco:A (1.9) BS03 MYR N/A N/A P02768 38782206
    29 8rco:A (1.9) BS04 MYR N/A N/A P02768 38782206
    30 8rco:A (1.9) BS05 MYR N/A N/A P02768 38782206
    31 8rco:A (1.9) BS06 MYR N/A N/A P02768 38782206
    32 8rco:B (1.9) BS01 MYR N/A N/A P02768 38782206
    33 8rco:B (1.9) BS02 MYR N/A N/A P02768 38782206
    34 8rco:B (1.9) BS03 MYR N/A N/A P02768 38782206
    35 8rco:B (1.9) BS04 MYR N/A N/A P02768 38782206
    36 8rco:B (1.9) BS05 MYR N/A N/A P02768 38782206
    37 8rgk:A (1.9) BS01 MYR N/A N/A P02768 38782206
    38 8rgk:A (1.9) BS02 MYR N/A N/A P02768 38782206
    39 8rgk:A (1.9) BS03 MYR N/A N/A P02768 38782206
    40 8rgk:A (1.9) BS04 MYR N/A N/A P02768 38782206
    41 8rgk:A (1.9) BS05 MYR N/A N/A P02768 38782206
    42 8rgk:A (1.9) BS06 MYR N/A N/A P02768 38782206
    43 8rgk:A (1.9) BS07 MYR N/A N/A P02768 38782206
    44 8rgk:B (1.9) BS02 MYR N/A N/A P02768 38782206
    45 8rgk:B (1.9) BS03 MYR N/A N/A P02768 38782206
    46 8rgk:B (1.9) BS04 MYR N/A N/A P02768 38782206
    47 8rgk:B (1.9) BS05 MYR N/A N/A P02768 38782206
    48 8rgk:B (1.9) BS06 MYR N/A N/A P02768 38782206
    49 8rgk:B (1.9) BS07 MYR N/A N/A P02768 38782206
    50 8rgl:A (1.9) BS01 MYR N/A N/A P02768 38782206
    51 8rgl:A (1.9) BS02 MYR N/A N/A P02768 38782206
    52 8rgl:A (1.9) BS03 MYR N/A N/A P02768 38782206
    53 8rgl:A (1.9) BS04 MYR N/A N/A P02768 38782206
    54 8rgl:A (1.9) BS05 MYR N/A N/A P02768 38782206
    55 8rgl:A (1.9) BS06 MYR N/A N/A P02768 38782206
    56 8rgl:B (1.9) BS01 MYR N/A N/A P02768 38782206
    57 8rgl:B (1.9) BS02 MYR N/A N/A P02768 38782206
    58 8rgl:B (1.9) BS03 MYR N/A N/A P02768 38782206
    59 8rgl:B (1.9) BS04 MYR N/A N/A P02768 38782206
    60 8rgl:B (1.9) BS05 MYR N/A N/A P02768 38782206
    61 8rgl:B (1.9) BS06 MYR N/A N/A P02768 38782206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218