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BioLiP Library
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3gdn:A (1.67) BS04 MXN 4.1.2.10 GO:0016614 ... Q945K2 19256550
    2 3gdn:A (1.67) BS05 MXN 4.1.2.10 GO:0016614 ... Q945K2 19256550
    3 3gdn:B (1.67) BS03 MXN 4.1.2.10 GO:0016614 ... Q945K2 19256550
    4 3gdn:B (1.67) BS04 MXN 4.1.2.10 GO:0016614 ... Q945K2 19256550
    5 5e4b:A (1.5) BS02 MXN ? GO:0016829 ... A0A1C9V3S9 28466867
    6 5e4b:B (1.5) BS02 MXN ? GO:0016829 ... A0A1C9V3S9 28466867
    7 5y02:A (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    8 5y02:C (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    9 5y02:F (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    10 5y02:K (1.8) BS01 MXN ? N/A A0A1L7NZN4 29155493
    11 6coe:A (1.844) BS02 MXN 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    12 6coe:B (1.844) BS02 MXN 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    13 6coh:A (2.367) BS01 MXN 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    14 6coh:B (2.367) BS02 MXN 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    15 6coi:B (2.024) BS02 MXN 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    16 7bwp:A (1.802) BS01 MXN 4.1.2.10 GO:0016491 ... O24243 N/A
    17 7ycd:A (2.01) BS01 MXN ? N/A A0A2Z5XCT7 38526556
    18 7ycd:A (2.01) BS02 MXN ? N/A A0A2Z5XCT7 38526556
    19 7ycd:B (2.01) BS01 MXN ? N/A A0A2Z5XCT7 38526556
    20 7ycd:B (2.01) BS02 MXN ? N/A A0A2Z5XCT7 38526556
    21 7ycd:C (2.01) BS01 MXN ? N/A A0A2Z5XCT7 38526556
    22 7ycd:C (2.01) BS02 MXN ? N/A A0A2Z5XCT7 38526556
    23 7ycd:D (2.01) BS01 MXN ? N/A A0A2Z5XCT7 38526556
    24 7ycd:D (2.01) BS02 MXN ? N/A A0A2Z5XCT7 38526556
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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