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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 148l:E (1.9) BS02 MUB 3.2.1.17 GO:0003796 ... P00720 8266098
    2 1wco:N (-1.00) BS02 MUB ? GO:0005576 ... P29559 15361862
    3 2ixu:A (2.28) BS01 MUB 3.2.1.17 GO:0003796 ... P15057 17581815
    4 2ixv:A (1.96) BS01 MUB 3.2.1.17 GO:0003796 ... P15057 17581815
    5 2wwd:A (2.25) BS01 MUB 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    6 4gyj:A (1.65) BS01 MUB 3.2.1.52 GO:0004553 ... P40406 23177201
    7 4gyj:A (1.65) BS02 MUB 3.2.1.52 GO:0004553 ... P40406 23177201
    8 4gyj:B (1.65) BS01 MUB 3.2.1.52 GO:0004553 ... P40406 23177201
    9 4gyj:B (1.65) BS02 MUB 3.2.1.52 GO:0004553 ... P40406 23177201
    10 4gyk:A (1.8) BS01 MUB 3.2.1.52 GO:0004553 ... P40406 23177201
    11 4knl:C (1.55) BS02 MUB 3.2.1.96
    3.5.1.28    		 GO:0008745 ... Q2FZK7 24599952
    12 4knl:D (1.55) BS02 MUB 3.2.1.96
    3.5.1.28    		 GO:0008745 ... Q2FZK7 24599952
    13 7q4t:AAA (1.27) BS02 MUB ? N/A F4YDQ3 35362467
    14 7z6k:A (1.6) BS04 MUB 2.3.2.10 GO:0008360 ... Q9EY50 36350642
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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