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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5yq7:L (4.1) BS05 MQE ? GO:0009772 ... Q83XD0 29674684
    2 5yq7:L (4.1) BS07 MQE ? GO:0009772 ... Q83XD0 29674684
    3 5yq7:M (4.1) BS04 MQE ? GO:0009772 ... Q83XD0 29674684
    4 5yq7:P (4.1) BS05 MQE ? GO:0005886 ... Q83XD1 29674684
    5 8hju:L (2.8) BS04 MQE ? GO:0009772 ... A7NQE8 37737710
    6 8hju:L (2.8) BS06 MQE ? GO:0009772 ... A7NQE8 37737710
    7 8hju:M (2.8) BS04 MQE ? GO:0009772 ... A7NQE8 37737710
    8 8hju:M (2.8) BS08 MQE ? GO:0009772 ... A7NQE8 37737710
    9 8hju:Y (2.8) BS01 MQE N/A N/A N/A 37737710
    10 8hjv:L (3.1) BS03 MQE ? GO:0009772 ... A7NQE8 37737710
    11 8hjv:L (3.1) BS07 MQE ? GO:0009772 ... A7NQE8 37737710
    12 8hjv:M (3.1) BS05 MQE ? GO:0009772 ... A7NQE8 37737710
    13 8hjv:M (3.1) BS06 MQE ? GO:0009772 ... A7NQE8 37737710
    14 8hjv:Y (3.1) BS01 MQE N/A N/A N/A 37737710
    15 8iug:L (2.86) BS04 MQE ? GO:0009772 ... Q83XD0 37468106
    16 8iug:L (2.86) BS08 MQE ? GO:0009772 ... Q83XD0 37468106
    17 8iug:M (2.86) BS07 MQE ? GO:0009772 ... Q83XD0 37468106
    18 8iug:R (2.86) BS01 MQE ? GO:0005886 ... Q83XD1 37468106
    19 8iun:L (2.85) BS03 MQE ? GO:0009772 ... A7NQE8 37468106
    20 8iun:L (2.85) BS08 MQE ? GO:0009772 ... A7NQE8 37468106
    21 8iun:M (2.85) BS04 MQE ? GO:0009772 ... A7NQE8 37468106
    22 8j5o:L (2.9) BS05 MQE ? GO:0009772 ... A7NQE8 37737710
    23 8j5o:L (2.9) BS07 MQE ? GO:0009772 ... A7NQE8 37737710
    24 8j5o:M (2.9) BS05 MQE ? GO:0009772 ... A7NQE8 37737710
    25 8j5o:M (2.9) BS08 MQE ? GO:0009772 ... A7NQE8 37737710
    26 8j5o:R (2.9) BS01 MQE ? GO:0005886 ... Q83XD1 37737710
    27 8j5o:T (2.9) BS01 MQE ? GO:0005886 ... Q83XD1 37737710
    28 8j5o:Y (2.9) BS01 MQE N/A N/A N/A 37737710
    29 8j5p:L (3.1) BS04 MQE ? GO:0009772 ... A7NQE8 37737710
    30 8j5p:L (3.1) BS06 MQE ? GO:0009772 ... A7NQE8 37737710
    31 8j5p:M (3.1) BS04 MQE ? GO:0009772 ... A7NQE8 37737710
    32 8j5p:M (3.1) BS08 MQE ? GO:0009772 ... A7NQE8 37737710
    33 8j5p:P (3.1) BS01 MQE ? GO:0005886 ... Q83XD1 37737710
    34 8j5p:Y (3.1) BS01 MQE N/A N/A N/A 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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