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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eys:L (2.2) BS07 MQ8 N/A GO:0009772 ... N/A 11095707
    2 1eys:M (2.2) BS07 MQ8 N/A GO:0009772 ... N/A 11095707
    3 3wmm:M (3.008) BS07 MQ8 ? GO:0005515 ... A8ASG6 24670637
    4 4v8k:AA (3.006) BS01 MQ8 ? GO:0005515 ... D2Z0P2 24670637
    5 4v8k:AL (3.006) BS09 MQ8 ? GO:0005515 ... D2Z0P3 24670637
    6 4v8k:AM (3.006) BS06 MQ8 ? GO:0005515 ... A8ASG6 24670637
    7 4v8k:BM (3.006) BS07 MQ8 ? GO:0005515 ... A8ASG6 24670637
    8 5b5m:M (3.3) BS07 MQ8 ? GO:0005515 ... A8ASG6 27933779
    9 5b5m:y (3.3) BS06 MQ8 ? GO:0005515 ... A8ASG6 27933779
    10 5b5n:L (3.3) BS09 MQ8 ? GO:0005515 ... D2Z0P3 27933779
    11 5b5n:M (3.3) BS08 MQ8 ? GO:0005515 ... A8ASG6 27933779
    12 5b5n:y (3.3) BS07 MQ8 ? GO:0005515 ... A8ASG6 27933779
    13 5y5s:L (1.9) BS10 MQ8 ? GO:0005515 ... D2Z0P3 29618814
    14 5y5s:M (1.9) BS07 MQ8 ? GO:0005515 ... A8ASG6 29618814
    15 7c52:L (2.89) BS11 MQ8 ? GO:0005515 ... D2Z0P3 33597527
    16 7c52:M (2.89) BS08 MQ8 ? GO:0005515 ... A8ASG6 33597527
    17 7c9r:L (2.82) BS09 MQ8 ? GO:0009772 ... G1BIY6 33009385
    18 7c9r:M (2.82) BS07 MQ8 ? GO:0009772 ... G1BIY7 33009385
    19 7o0u:L (2.35) BS02 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    20 7o0u:L (2.35) BS09 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    21 7o0u:M (2.35) BS10 MQ8 N/A GO:0009772 ... N/A 35171663
    22 7o0u:ac (2.35) BS01 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    23 7o0u:an (2.35) BS02 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    24 7o0u:ao (2.35) BS01 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    25 7o0v:L (2.5) BS02 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    26 7o0v:L (2.5) BS09 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    27 7o0v:M (2.5) BS08 MQ8 N/A GO:0009772 ... N/A 35171663
    28 7o0v:ac (2.5) BS01 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    29 7o0v:an (2.5) BS02 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    30 7o0w:L (2.47) BS03 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    31 7o0w:L (2.47) BS08 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    32 7o0w:M (2.47) BS06 MQ8 N/A GO:0009772 ... N/A 35171663
    33 7o0w:ac (2.47) BS01 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    34 7o0x:L (2.44) BS05 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    35 7o0x:L (2.44) BS10 MQ8 ? GO:0009772 ... A0A143BHR2 35171663
    36 7o0x:M (2.44) BS08 MQ8 N/A GO:0009772 ... N/A 35171663
    37 7o0x:ac (2.44) BS01 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    38 7o0x:ao (2.44) BS01 MQ8 ? GO:0005886 ... A0A143BHS7 35171663
    39 7vrj:L (2.81) BS10 MQ8 N/A GO:0009772 ... N/A 35460693
    40 7vrj:M (2.81) BS07 MQ8 N/A GO:0009772 ... N/A 35460693
    41 7vrj:M (2.81) BS09 MQ8 N/A GO:0009772 ... N/A 35460693
    42 8k5o:L (2.42) BS09 MQ8 ? GO:0015979 ... A0A0X8XAH6 38411333
    43 8k5o:M (2.42) BS08 MQ8 ? GO:0015979 ... A0A0X8X847 38411333
    44 8k5o:M (2.42) BS09 MQ8 ? GO:0015979 ... A0A0X8X847 38411333
    45 8wdu:L (2.24) BS10 MQ8 ? GO:0009772 ... P51762 38347078
    46 8wdu:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078
    47 8wdv:L (2.24) BS11 MQ8 ? GO:0009772 ... P51762 38347078
    48 8wdv:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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