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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1amf:A (1.75) BS01 MOO ? GO:0015412 ... P37329 9302996
    2 1eoi:A (2.4) BS01 MOO 3.1.3.2 GO:0003993 ... Q9S1A6 10835340
    3 1eoi:B (2.4) BS01 MOO 3.1.3.2 GO:0003993 ... Q9S1A6 10835340
    4 1eoi:C (2.4) BS01 MOO 3.1.3.2 GO:0003993 ... Q9S1A6 10835340
    5 1gun:A (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    6 1gun:A (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    7 1gun:B (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    8 1gun:C (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    9 1gun:C (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    10 1gun:D (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    11 1gun:D (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    12 1gun:E (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    13 1gun:F (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    14 1gun:F (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    15 1guo:A (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    16 1guo:A (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    17 1guo:B (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    18 1guo:B (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    19 1guo:C (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    20 1guo:C (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    21 1guo:D (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    22 1guo:D (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    23 1guo:E (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    24 1guo:E (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    25 1guo:F (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    26 1guo:F (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    27 1h9m:A (1.65) BS01 MOO ? GO:0015689 ... Q44529 11352591
    28 1h9m:A (1.65) BS02 MOO ? GO:0015689 ... Q44529 11352591
    29 1h9m:B (1.65) BS01 MOO ? GO:0015689 ... Q44529 11352591
    30 1h9m:B (1.65) BS02 MOO ? GO:0015689 ... Q44529 11352591
    31 1h9s:A (1.82) BS01 MOO ? GO:0015689 ... P0A9G8 11259434
    32 1h9s:A (1.82) BS02 MOO ? GO:0015689 ... P0A9G8 11259434
    33 1h9s:B (1.82) BS01 MOO ? GO:0015689 ... P0A9G8 11259434
    34 1h9s:B (1.82) BS02 MOO ? GO:0015689 ... P0A9G8 11259434
    35 1o7l:A (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    36 1o7l:A (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    37 1o7l:B (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    38 1o7l:B (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    39 1o7l:C (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    40 1o7l:C (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    41 1o7l:D (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    42 1o7l:D (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    43 1o7l:D (2.75) BS03 MOO ? GO:0000987 ... P0A9G8 12581638
    44 1z13:A (2.2) BS01 MOO 3.1.3.2
    3.1.3.48    		 GO:0003993 ... P11064 8993313
    45 2a3p:A (2.3) BS05 MOO ? GO:0009055 ... Q30WH0 16580681
    46 2h5y:A (1.7) BS03 MOO ? GO:0015689 ... Q8PHA1 16511325
    47 2h5y:B (1.7) BS01 MOO ? GO:0015689 ... Q8PHA1 16511325
    48 2h5y:C (1.7) BS02 MOO ? GO:0015689 ... Q8PHA1 16511325
    49 2inn:B (2.7) BS04 MOO ? GO:0016491 ... Q84AQ2 17176061
    50 2onr:A (1.6) BS02 MOO ? GO:0005886 ... O30142 17322901
    51 2r8u:A (1.35) BS01 MOO ? GO:0000132 ... Q15691 N/A
    52 3gzg:A (1.55) BS01 MOO ? GO:0015689 ... Q8PHA1 N/A
    53 3gzg:B (1.55) BS01 MOO ? GO:0015689 ... Q8PHA1 N/A
    54 3gzg:C (1.55) BS01 MOO ? GO:0015689 ... Q8PHA1 N/A
    55 3k6w:A (2.45) BS01 MOO ? GO:1901359 ... Q8TTZ5 20208152
    56 3k6x:A (2.25) BS01 MOO ? GO:1901359 ... Q8TTZ5 20208152
    57 3k6x:B (2.25) BS01 MOO ? GO:1901359 ... Q8TTZ5 20208152
    58 3psh:A (1.5) BS01 MOO ? GO:0005515 ... P44206 22078568
    59 3rvr:A (2.1) BS02 MOO ? GO:0000156 ... P0AE67 25928369
    60 3rvr:B (2.1) BS02 MOO ? GO:0000156 ... P0AE67 25928369
    61 4brf:A (1.6) BS01 MOO 3.6.1.5 GO:0000166 ... Q5ZUA2 23830739
    62 4brf:B (1.6) BS01 MOO 3.6.1.5 GO:0000166 ... Q5ZUA2 23830739
    63 4bvp:A (1.49) BS01 MOO ? GO:0000166 ... Q5ZUA2 24699658
    64 4bvp:B (1.49) BS03 MOO ? GO:0000166 ... Q5ZUA2 24699658
    65 4hi1:A (1.964) BS01 MOO 3.6.1.7 GO:0003998 ... A5F8G9 N/A
    66 4hi1:B (1.964) BS01 MOO 3.6.1.7 GO:0003998 ... A5F8G9 N/A
    67 4hi1:C (1.964) BS01 MOO 3.6.1.7 GO:0003998 ... A5F8G9 N/A
    68 5eru:A (1.6) BS02 MOO 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q03555 27112598
    69 5g2s:A (2.838) BS01 MOO 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q39054 27803248
    70 6etf:A (1.781) BS02 MOO 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q39054 29717023
    71 6fw2:A (1.78) BS02 MOO 1.7.-.-
    3.2.1.17    		 GO:0003796 ... P00720
    Q5VT66    		 30397129
    72 6fw2:A (1.78) BS03 MOO 1.7.-.-
    3.2.1.17    		 GO:0003796 ... P00720
    Q5VT66    		 30397129
    73 6fw2:A (1.78) BS04 MOO 1.7.-.-
    3.2.1.17    		 GO:0003796 ... P00720
    Q5VT66    		 30397129
    74 6gax:A (1.77) BS02 MOO 2.10.1.1
    2.7.7.75    		 GO:0032324 ... Q39054 29717023
    75 6gb4:A (1.648) BS02 MOO 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q39054 29717023
    76 6gbc:A (1.59) BS02 MOO 2.10.1.1
    2.7.7.75    		 GO:0006777 ... Q39054 29717023
    77 6rkd:B (3.2) BS01 MOO ? GO:0005737 ... P84253 31811022
    78 6rkd:B (3.2) BS04 MOO ? GO:0005737 ... P84253 31811022
    79 6rkd:D (3.2) BS02 MOO ? GO:0005737 ... P84253 31811022
    80 6rkd:D (3.2) BS05 MOO ? GO:0005737 ... P84253 31811022
    81 6rkd:F (3.2) BS03 MOO ? GO:0005737 ... P84253 31811022
    82 6rkd:F (3.2) BS06 MOO ? GO:0005737 ... P84253 31811022
    83 6rkd:H (3.2) BS01 MOO ? GO:0005737 ... P84253 31811022
    84 6rkd:H (3.2) BS04 MOO ? GO:0005737 ... P84253 31811022
    85 6rkd:J (3.2) BS02 MOO ? GO:0005737 ... P84253 31811022
    86 6rkd:J (3.2) BS05 MOO ? GO:0005737 ... P84253 31811022
    87 6rkd:L (3.2) BS03 MOO ? GO:0005737 ... P84253 31811022
    88 6rkd:L (3.2) BS06 MOO ? GO:0005737 ... P84253 31811022
    89 6rke:B (1.7) BS03 MOO ? GO:0005737 ... P84253 31811022
    90 6rke:D (1.7) BS03 MOO ? GO:0005737 ... P84253 31811022
    91 6rke:F (1.7) BS04 MOO ? GO:0005737 ... P84253 31811022
    92 6rke:H (1.7) BS03 MOO ? GO:0005737 ... P84253 31811022
    93 6rke:J (1.7) BS03 MOO ? GO:0005737 ... P84253 31811022
    94 6rke:L (1.7) BS03 MOO ? GO:0005737 ... P84253 31811022
    95 7t51:A (2.5) BS01 MOO ? GO:0015689 ... Q9I2N2 35685933
    96 7t51:B (2.5) BS01 MOO ? GO:0015689 ... Q9I2N2 35685933
    97 7z5j:B (2.58) BS01 MOO ? GO:0005737 ... P84253 35779405
    98 7z5j:D (2.58) BS01 MOO ? GO:0005737 ... P84253 35779405
    99 7z5j:F (2.58) BS01 MOO ? GO:0005737 ... P84253 35779405
    100 7z5j:H (2.58) BS01 MOO ? GO:0005737 ... P84253 35779405
    101 7z5j:J (2.58) BS01 MOO ? GO:0005737 ... P84253 35779405
    102 7z5j:L (2.58) BS01 MOO ? GO:0005737 ... P84253 35779405
    103 7zub:A (2.85) BS02 MOO ? GO:0001890 ... P08238 36385050
    104 7zub:B (2.85) BS02 MOO ? GO:0001890 ... P08238 36385050
    105 8k8l:A (1.77) BS01 MOO ? GO:0015689 ... A0A0H3GU89 37751633
    106 8qmo:A (2.76) BS01 MOO ? GO:0001890 ... P08238 38135181
    107 8qmo:B (2.76) BS01 MOO ? GO:0001890 ... P08238 38135181
    108 9bed:A (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    109 9bed:A (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    110 9bed:A (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    111 9bed:B (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    112 9bed:B (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    113 9bed:B (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    114 9bed:C (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    115 9bed:C (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    116 9bed:C (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    117 9bed:D (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    118 9bed:D (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    119 9bed:D (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    120 9bed:E (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    121 9bed:E (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    122 9bed:E (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    123 9bed:F (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    124 9bed:F (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    125 9bed:F (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    126 9d2c:A (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    127 9d2c:A (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    128 9d2c:A (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    129 9d2c:B (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    130 9d2c:B (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    131 9d2c:B (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    132 9d2c:C (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    133 9d2c:C (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    134 9d2c:C (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    135 9d2c:D (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    136 9d2c:D (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    137 9d2c:D (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    138 9d2c:E (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    139 9d2c:E (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    140 9d2c:E (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    141 9d2c:F (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    142 9d2c:F (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    143 9d2c:F (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    144 9d2c:H (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    145 9d2c:H (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    146 9d2c:H (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    147 9d2c:I (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    148 9d2c:I (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    149 9d2c:I (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    150 9d2c:J (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    151 9d2c:J (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    152 9d2c:J (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    153 9d2c:K (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    154 9d2c:K (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    155 9d2c:K (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    156 9d2c:L (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    157 9d2c:L (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    158 9d2c:L (2.38) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    159 9d2c:M (2.38) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    160 9d2c:M (2.38) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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